Query= MSMg01no486_l09.b1 MSMg01no486_l09.b1 CHROMAT_FILE:
MSMg01no486_l09.b1 PHD_FILE: MSMg01no486_l09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:05 2005
(590 letters)
>mm_chr17_61950062_61951053
Length = 992
Score = 681 bits (352), Expect = 0.0
Identities = 371/378 (98%), Gaps = 2/378 (0%)
Strand = Plus / Minus
Query: 8 gaattcatttccatttaatcattgagtattattgacat--aatctatctaattattgtgt 65
||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 378 gaattcatttctatttaatcattgagtgttattgacataaaatctatctaattattgtgt 319
Query: 66 acatcaacttatttcagagagagatttttaaaagcctacaatctatggccccattttgta 125
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 acatcaacttctttcagagagagatttttaaaagcctacaatctatggccccattttgta 259
Query: 126 tatatccattggtcttatttttaatcctcagaacatttgctcactgcagaacccaactgg 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tatatccattggtcttatttttaatcctcagaacatttgctcactgcagaacccaactgg 199
Query: 186 taaaattcttgccttgcaagcatgatgacccatgactcttaggattcacattaaaaagcc 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 taaaattcttgccttgcaagcatgatgacccatgactcttaggattcacattaaaaagcc 139
Query: 246 tagcatgatgacacttgtaattccaggactgtaaaagtgcagataggcaaaccgcggggc 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 tagcatgatgacacttgtaattccaggactgtaaaagtgcagataggcaaaccgcggggc 79
Query: 306 ccatggccacttagcttagcctactatgcaagttgtaagtgagtgagagactgtctctaa 365
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 78 ccatggccacttagcttagcctactatgcaagttgtaagtgaatgagagactgtctctaa 19
Query: 366 ataaataaataaataaat 383
||||||||||||| ||||
Sbjct: 18 ataaataaataaaaaaat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 992
Length adjustment: 10
Effective length of query: 580
Effective length of database: 982
Effective search space: 569560
Effective search space used: 569560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no486_l09.g1 MSMg01no486_l09.g1 CHROMAT_FILE:
MSMg01no486_l09.g1 PHD_FILE: MSMg01no486_l09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:05 2005
(668 letters)
>mm_chr17_61859183_61860252
Length = 1070
Score = 1234 bits (638), Expect = 0.0
Identities = 662/670 (98%), Gaps = 2/670 (0%)
Strand = Plus / Plus
Query: 1 atttgcttgggactctgataaaagatctattaagtaaatattcattgcctgagttcaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttgcttgggactctgataaaagatctattaagtaaatattcattgcctgagttcaaac 260
Query: 61 ttataaaaggcttaacaaatgagcttgacttctataataaagagaagagatacctgaata 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 ttataaaaggcttaacaaatgagcttgacttctataataaagagaagagatacctgaaaa 320
Query: 121 gcca-agcacagacgaattaattgagtttcattaagattttgatgatattggcgtatata 179
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccacagcacagacgaattaattgagtttcattaagattttgatgatattggcgtatata 380
Query: 180 cttatgcaatgtggcatatgatgctcagactatcagactagtaaatggctttagtattga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttatgcaatgtggcatatgatgctcagactatcagactagtaaatggctttagtattga 440
Query: 240 ctgtggcttttggaaattaggtgattagtgatttaacagaaaatggttaaaataaaagaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgtggcttttggaaattaggtgattagtgatttaacagaaaatggttaaaataaaagaa 500
Query: 300 aatggagaagaatttaagaaccagtaggggaacttctgtgcagtggccataaaagagtaa 359
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatggaaaagaatttaagaaccagtaggggaacttctgtgcagtggccataaaagagtaa 560
Query: 360 tacatagcactgcctttttttctcacttagaaatgtttctcattttt-aagatgaattta 418
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 561 tacatagtactgcctttttttctcacttagaaatgtttctcattttttaagatgaattta 620
Query: 419 gacattaaagaagtgttcaaatgttcattttgtgctctgcataagaggctttaaaaatgt 478
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 621 gacattaaagaagtgttcaaatgttcattttgtgctctgcataagaagctttaaaaatgt 680
Query: 479 tatttttcctagacttgaaattataggtaatctgcttgtatctccttttatccgcgtcat 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tatttttcctagacttgaaattataggtaatctgcttgtatctccttttatccgcgtcat 740
Query: 539 tccatgcataatcagtgcccaagtaacaaactaaagcttccttagggatccatcaggagt 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tccatgcataatcagtgcccaagtaacaaactaaagcttccttagggatccatcaggagt 800
Query: 599 tccgatcctaaatgacaacaacatttctatagaaaggaactttaagtgaaattcaaagag 658
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 801 tcggatcctaaatgacaacaacatttctatagaaaggaacttaaagtgaaattcaaagag 860
Query: 659 ccattcaggc 668
||||||||||
Sbjct: 861 ccattcaggc 870
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1070
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1060
Effective search space: 697480
Effective search space used: 697480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
