Query= MSMg01no487_g20.b1 MSMg01no487_g20.b1 CHROMAT_FILE:
MSMg01no487_g20.b1 PHD_FILE: MSMg01no487_g20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:02 2005
(416 letters)
>mm_chr17_43367514_43368329
Length = 816
Score = 669 bits (346), Expect = 0.0
Identities = 388/406 (95%), Gaps = 9/406 (2%)
Strand = Plus / Minus
Query: 1 aggcgaggaggctggcatcctctctctgatgctcagcatcgccacgggcagacttctcag 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 527 aggcgaggaggctggcatcctctctctgatgctcagcatcgccgcgggcagacttctcag 468
Query: 61 gcttcctctgtcacagctgtgcaagccctccatctcctccctgctgcctcttcccccaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 gcttcctctgtcacagctgtgcaagccctccatctcctccctgctgcctcttcccccaac 408
Query: 121 gtggccctttctgtaacagtttgagtcacacattagtaatttaccagtaagttcaagcaa 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 407 gtggccctttctgtaacagtttgagtcacacattagtaacttaccagtaagttcaagcaa 348
Query: 181 ggccttgaaagcagaggacagaattcctcttcttaaggaaatcaatgaggtaagtttgac 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 347 ggccttgaaagcagaggacagaattcctcttcttaaggaaatcaacgaggtaagtttgac 288
Query: 241 tcctgtattgattgattgcttttacaaatgctaggccgctttctccaggagtcatatagc 300
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 tcctgtatggattgagtgcttttacaaatgctaggccgctttctccaggagtcatatagc 228
Query: 301 cattctgtcatatgtctgacatattgtc---tcctcgtcctcctcctcctctttgtcctc 357
|||||||||||||||||||||||||||| ||||| |||||||||||||| | ||||
Sbjct: 227 cattctgtcatatgtctgacatattgtcgtctcctcctcctcctcctcctcct---cctc 171
Query: 358 ctcctcctcctcctcctcctctacctcctcctcctccacctcctcc 403
|||||||| |||||||||||| ||||||||||||| ||||||||
Sbjct: 170 ctcctccttctcctcctcctc---ctcctcctcctcctcctcctcc 128
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space: 328449
Effective search space used: 328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no487_g20.g1 MSMg01no487_g20.g1 CHROMAT_FILE:
MSMg01no487_g20.g1 PHD_FILE: MSMg01no487_g20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:02 2005
(698 letters)
>mm_chr17_43272474_43273568
Length = 1095
Score = 1162 bits (601), Expect = 0.0
Identities = 673/699 (96%), Gaps = 8/699 (1%)
Strand = Plus / Plus
Query: 2 tttt-gaataatagctctctgccacatgtacccaggtgctctgatccccaaatacatcaa 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttggaataatagctctctgccacatgtacccaggtgctctgatccccaaatacatcaa 260
Query: 61 agctgctttgtcacccagtctgtgccagaatgggcttgcacaatgcatctgagcaccgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agctgctttgtcacccagtctgtgccagaatgggcttgcacaatgcatctgagcaccgag 320
Query: 121 tgctaatatgctctcctgagagtagcagtggggagagtctgagctggtgtcagtgagcta 180
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 321 tgctaatatgctctcctgagagcagcagtggggagagtctgagctggtggcagtgagcta 380
Query: 181 gctgcagattgctctgggctggtggcagcaggacaagtcaattaagggagtgattgggag 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 gctgcagattgctctgggctggtggcagcaggacaagtcaattaggggagtgattgggag 440
Query: 241 aaaggattgtaagaggcacccagagcctccaggcgcttgtttgaaaaatggaagacacac 300
|||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 aaaggaaggcaagaggcacccagagcctccaggctcttgtttgaaaaatggaagacacac 500
Query: 301 ttgggtttttccacatttccccaggtgtgtgctcgct-gggcctggtcacctgctctcct 359
||| |||||||||||||||| ||||| |||||| ||||||||||||||||||||||
Sbjct: 501 ctggctttttccacatttccctaggtg----ctcgctagggcctggtcacctgctctcct 556
Query: 360 gattgactcagcagggattgggttgtaaaattaggggctgggtgatgaggcagcaacttc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gattgactcagcagggattgggttgtaaaattaggggctgggtgatgaggcagcaacttc 616
Query: 420 cgagtgcctattctgtgcatgtctttgtgcatttatcaaggccctcaaaatcaccctcac 479
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 617 cgagtgcctattctgtgcatgtctttgtacatttatcaaggccctcaaa-tcaccctcac 675
Query: 480 agagcagatattggtcccttgttttgcaaatagggataccgaggtccagagagaggtact 539
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 agagcagatattggccccttgttttgcaaatagggataccgaggtccagagagaggtact 735
Query: 540 aagactacaaagggagatgccacccccaaatccttctttcttcatctccaagcaattcta 599
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 736 aagactacaaagggagatgccacccccaaatccttctttctttatctccaagtaattcta 795
Query: 600 gccaagaaccacatgggaagggtgggtgggctcagcccaactctccttctaagaacaaaa 659
|||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 796 gccaaggaccacatggga-gggtgggtgggctcagcccagctctccttctaagaacaaaa 854
Query: 660 aggacttatgatgtcctctaggctccccatttctctgtg 698
|||||||||||||||| || |||||||||||||||||||
Sbjct: 855 aggacttatgatgtcccctgggctccccatttctctgtg 893
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1095
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1085
Effective search space: 746480
Effective search space used: 746480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
