BAC Information

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BAC

Clone NameMSMg01-488C11
Chromosome17 (Build37)
Map Location 47,728,568 - 47,729,210
singlet/doubletsinglet
Overlap geneCcnd3
Upstream genePtk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203, A330017A19Rik, Tbcc, Prph2, Ubr2, LOC100043385, EG240110, Trerf1, Mrps10, Guca1b, Guca1a, EG545208, 1700001C19Rik, AI661453, Tbn
Downstream geneBysl, Trfp, LOC668463, Usp49, 1110002E23Rik, Frs3, Pgc, LOC100043405, Tcfeb, Mdfi, Foxp4, LOC383250, 1700122O11Rik, 1700067P10Rik, 9830107B12Rik, A530064D06Rik, LOC100043419, Trem1, Trem3, Treml4, Treml2, B430306N03Rik, Trem2, Treml1, Nfya, AI314976, Apobec2, Bzrpl1, Unc5cl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-488C11.T7 (MSMg01no488_c11.b1)MSMg01-488C11.TJ (MSMg01no488_c11.g1)
ACCAG566945AG566946
length766745
length of high quality
(start - end)
234 (83 - 316)636 (75 - 710)
definitionCHROMAT_FILE: MSMg01no488_c11.b1 PHD_FILE: MSMg01no488_c11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:59 2005CHROMAT_FILE: MSMg01no488_c11.g1 PHD_FILE: MSMg01no488_c11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAGGTCGAAATTTGCGGCGGCTAGACGACTCACACTCAAAAAAGGGTCCG
CGGGATTCTACATCTCTATATTATCTTCAGCTACTTTTTTAAAAAAGATT
TATTTTATGTGCCTGATTGTTTTGACTGCTTGTATGTATGTGGACTATGT
GCATGCAGTGCCTGAGCTGACCAGAAGAGGGCGTCTGGCCTCCTGGATGG
TGAACTCAGGATGATTTTGAGCCATCAAGTGGATGCTGGGAACCATACAG
CCCAGGCAAACTGTTCCAAGACAGGGTGTTACTAAACCCACAGAGATCCC
CTGACCTACCTTCCTCATTTTTGTGTCTTGCACTATAGGCAACTTTAGCT
TCCAGAGTACTGGGACTAAAGGAATTTATCACCCCTCTTGGCTTCCGCAG
TAAACCTCCCACGTTGATACAGTATGGCTGGAGGTGTCTGGGGGACCCTA
TCACACCCAAGTCTTGTCACGCAGAACACCATACATGTCACATGTATGGA
GACATCACATGTTAATGATCCCCATTACCATGATGCACACCCTGTCTGAC
AGAATTGATTGGGGACTGTAAAATGCTTGGTCACCACACTTGAAAGAAAT
ATGCTCTTTGCCCTGATCTGGTTTAAAGATCATAAGTGTAAAGTCTTCAG
CTTGTTCGTTTCTATTCAGTCAGCTTAGGCTGGGTTCTCTCTCTATTAGA
ACCCCCATAAAGTGTTTGATCTTGTAAAAGTAAATTTGAACCCTCAACTG
CCCTCCCCTTACCTTC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTGCCCGAAGGAATCCAGGCCAGCCAGACCCATGTCAGATG
ACTCAAATAACAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGACAG
GCATGACAGAGCACCCCTTTAATCCCAGCACTTTGAAGACAGAGGCAAGC
AGATTTCTTTGAGTTCAAAGCCAGCCTAGTCTAAATAAGAGTTCTAGGTC
AGGAGGAGCTAATATCATGAGACTATGTCTCAAAAACAAAAATCAAGGGA
AAAAAGGATGTAATAAGTGTTGGCAGGAAAGAGGAAAGGAGGGAAAGAAA
GAAGAAAGCCCACCACTAAGACACTGCTCTCTCTGCTCAGCCCAAGTGAG
CCCCAGGAAAGCACAGGACAATATATAAGCAGTGAGATCCATCTACACAC
TAGTCTACACACTGGACTATGCACTGGTCTACACACTAGTCTACACACTG
GTCTACACACTAGTCTTGCGCTGAGCAAGGGGTCAGAATCCACATATGGG
GATGGCTTCTCATACAGGAAGGAGGCATGATGGGATTGCTTCAGTCACAG
AAGGTCACTGCCCCAGTGGTTTCTCTCCTCGTTGAAACAGTTTGTCTTAT
TTTATAGCTGACCTCGAATTCTCCAGCTTCGTGCCTCAGTTTCCCAAGTG
CTGGGATTACAAATTCGTACCACCATGTTTATACATCAAGCTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no488_c11.g1 MSMg01no488_c11.g1 CHROMAT_FILE:
MSMg01no488_c11.g1 PHD_FILE: MSMg01no488_c11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:59 2005
         (636 letters)



>mm_chr17_47728230_47729264
          Length = 1035

 Score = 1180 bits (610), Expect = 0.0
 Identities = 632/644 (98%), Gaps = 9/644 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggccagccagacccatgtcagatgactcaaataac--------aaggaaggaaggaag 52
           |||||||||||||||||||||||||||||||||||||        |||||||||||||||
Sbjct: 981 caggccagccagacccatgtcagatgactcaaataacaaggaaggaaggaaggaaggaag 922

                                                                       
Query: 53  gaaggaaggaaggaaggaagacaggcatgacagagcacccctttaatcccagcactttga 112
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 gaaggaaggaaggaaggaagacaggcatgacagagcacccctttaatcccagcactttga 862

                                                                       
Query: 113 agacagaggcaagcagatttctttgagttcaaagccagcctagtctaaataagagttcta 172
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 agacagaggcaagcagatttctttgagttcaaagccagcctagtctaaataagagttcta 802

                                                                       
Query: 173 ggtcaggaggagctaatatcatgagactatgtctcaaaaacaaaaatcaagggaaaaaag 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ggtcaggaggagctaatatcatgagactatgtctcaaaaacaaaaatcaagggaaaaaag 742

                                                                       
Query: 233 gatgtaataagtgttggcaggaaagaggaaaggagggaaagaaagaagaaagcccaccac 292
           ||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gatgtaataag-gaaggcaggaaagaggaaaggagggaaagaaagaagaaagcccaccac 683

                                                                       
Query: 293 taagacactgctctctctgctcagcccaagtgagccccaggaaagcacaggacaatatat 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 taagacactgctctctctgctcagcccaagtgagccccaggaaagcacaggacaatatat 623

                                                                       
Query: 353 aagcagtgagatccatctacacactagtctacacactggactatgcactggtctacacac 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aagcagtgagatccatctacacactagtctacacactggactatgcactggtctacacac 563

                                                                       
Query: 413 tagtctacacactggtctacacactagtcttgcgctgagcaaggggtcagaatccacata 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tagtctacacactggtctacacactagtcttgcgctgagcaaggggtcagaatccacata 503

                                                                       
Query: 473 tggggatggcttctcatacaggaaggaggcatgatgggattgcttcagtcacagaaggtc 532
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tggggatggcttttcatacaggaaggaggcatgatgggattgcttcagtcacagaaggtc 443

                                                                       
Query: 533 actgccccagtggtttctctcctcgttgaaacagtttgtcttattttatagctgacctcg 592
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 actgccccagtggtttctctcctcgttgaaacagtttgtcttattttatagctgacctcg 383

                                                       
Query: 593 aattctccagcttcgtgcctcagtttcccaagtgctgggattac 636
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aattctccagcttcgtgcctcagtttcccaagtgctgggattac 339


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 7
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1035
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1025
Effective search space:   641650
Effective search space used:   641650
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)