Query= MSMg01no488_f08.b1 MSMg01no488_f08.b1 CHROMAT_FILE:
MSMg01no488_f08.b1 PHD_FILE: MSMg01no488_f08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:13 2005
(684 letters)
>mm_chr17_70806898_70807981
Length = 1084
Score = 1203 bits (622), Expect = 0.0
Identities = 667/682 (97%), Gaps = 4/682 (0%)
Strand = Plus / Plus
Query: 5 gaattcaacactatcgc-tgtgagagttaaaaaacaaaaacaaaaacaaaaagccacaaa 63
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaacactag-gcatgtgagagttaaaaaacaaaaacaaaaacaaaaagccacaaa 263
Query: 64 caagaaaagaacaaaacaaaactaactcaactgtatcagatagtttcttcatacatagtt 123
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 264 caagaaaagaacaaaacaaaactaactcaactgtatcggatagtttcttcatacatagtt 323
Query: 124 tccagaaggatttttccatgtggacagccatgtactacttcagatgcatcctgtggtact 183
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 324 tccagaaggatttttccatgtggacagccatgtactacttcagatgcatcctgtggtagt 383
Query: 184 cttgattggcccactgctgtacaagcatcctgggtaccacagtggacagtgtgttcttat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cttgattggcccactgctgtacaagcatcctgggtaccacagtggacagtgtgttcttat 443
Query: 244 ctcactgcccttctactgcactccgtcattgatgcaaacaccatatctgttttggttttg 303
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 444 ctcactgcccttctactgcactccatcattgatgcaaacaccatatctgttttggttttg 503
Query: 304 gttttggttttttggtttttttgtcagcacatgattatatttgcatattcctgtgaggta 363
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gttttggtttttttgtttttt-gtcagcacatgattatatttgcatattcctgtgaggta 562
Query: 364 atgcttttaagtttatacatagtgtcactactatgatacttttactctaacacttttatg 423
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 acgcttttaagtttatacatagtgtcactactatgatacttttactctaacacttttatg 622
Query: 424 ttaacttttaacactgtatcactactaaactacttcaggtcacattttaattcatccatt 483
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 623 ttaacttttaacactgtatcactactaaactacttcaggtcacattttaattcatctgtt 682
Query: 484 gtctgctaaggggtacagagtagttggataagccctagttaaattgtattcctcttaaac 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gtctgctaaggggtacagagtagttggataagccctagttaaattgtattcctcttaaac 742
Query: 544 atgccacacaaatgtagatgagctttctccagtggctacctaggtctagtgatcctgaaa 603
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 743 atgccacacaaatgtagatgagctttctccagtggctaccttggtctagtgatcctgaaa 802
Query: 604 caatttttttt-aatacaaaaggcaagtaaggtaacttcttatctaaacatggttttact 662
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 cattttttttttaatacaaaaggcaagtaaggtaacttcttatctaaacatggttttact 862
Query: 663 tccagtcatgggacaccccagc 684
|||||| |||||||||||||||
Sbjct: 863 tccagttatgggacaccccagc 884
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space: 723876
Effective search space used: 723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no488_f08.g1 MSMg01no488_f08.g1 CHROMAT_FILE:
MSMg01no488_f08.g1 PHD_FILE: MSMg01no488_f08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:13 2005
(639 letters)
>mm_chr17_70962531_70963569
Length = 1039
Score = 743 bits (384), Expect = 0.0
Identities = 407/418 (97%), Gaps = 6/418 (1%)
Strand = Plus / Minus
Query: 222 atctccaggactgatgtttaaaaaacaaaacaaaacaaaaacaaaaacaagccagctgtg 281
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1039 atctccaggactgatgtttaaaaaacaaaacaaaacaaaaaccaaaacaagccagctgtg 980
Query: 282 gtggcctgcttgtaatcctcctactcacaagctgacggacttccctatttgccgagttct 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 979 gtggcctgcttgtaatcctcctactcacaagctgacggacttccctatttgccgagttct 920
Query: 342 aaggcgataagggacccagctgaaagagtgatagctgaggctgacctctgacctccatag 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 919 aaggcgataagggacccagctgaaagagtgatagctgaggctgacctctgacctccatag 860
Query: 402 ccatgtattcatgcacacgcacacccgctctacaccctcccacatgaacacacgtacgtg 461
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 859 ccatgtattcat------gcacaccggctctacaccctcccacatgaacacacgtacgtg 806
Query: 462 aacatatgtacacacattagaaaactaaaaatgcaaatgggtaatttaacgtattgaaca 521
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 805 aacatatgtacacacattagaaaactaaaaatgcaggtaggtaatttaacgtattgaaca 746
Query: 522 gaaagtcacagtcagtccctatctgcttctcatctgcacattaagggtttttacctggag 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gaaagtcacagtcagtccctatctgcttctcatctgcacattaagggtttttacctggag 686
Query: 582 tttgcctgctagtgctctgccccagggcatatctaacttggcagtatcttgtctcaag 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tttgcctgctagtgctctgccccagggcatatctaacttggcagtatcttgtctcaag 628
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space: 647241
Effective search space used: 647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
