BAC Information

Click to search

BAC

Clone NameMSMg01-489A04
Chromosome17 (Build37)
Map Location 55,478,217 - 55,478,852
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668529, 1700025K24Rik, Trp53-ps, LOC240117, EG629178, LOC100043833, LOC100043485
Downstream geneLOC677496, St6gal2, LOC383258, Pot1b, Emr4, Zfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b, Tnfaip8l1, D17Wsu104e, Dpp9, LOC668573, A230051N06Rik, Fem1a, Ticam1, M6prbp1, Arrdc5, Uhrf1, Jmjd2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-489A04.T7 (MSMg01no489_a04.b1)MSMg01-489A04.TJ (MSMg01no489_a04.g1)
ACCAG567597AG567598
length601729
length of high quality
(start - end)
50 (73 - 122)636 (83 - 718)
definitionCHROMAT_FILE: MSMg01no489_a04.b1 PHD_FILE: MSMg01no489_a04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:05 2005CHROMAT_FILE: MSMg01no489_a04.g1 PHD_FILE: MSMg01no489_a04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTCCTCTTATTTGGGCGCTATCGACTCCTTTCGAGAGATCCGGATTCT
CTGTCCTAGTTACGTTAAGACATACATTGTCTAAATCTATCTTCAGTATT
TTGTGTGTGTGTGTGTGTGTGTNGTGNTTGGNTTTTGGNNTTTTGGGGGT
TTTTGGNNNTTGTGTGACTTTGAGGACAACAGTAGTACCTTATTGCACAT
CAGTTTCCCAAGAATTCCCTTTTTAAGAATGTGTATTGGTGGGGGCTGGG
TACTGACCCCAAGGTCTGAACCTTGCAGACTACTTGCCCTTGGGATGCAA
GTCTGCCGGGGGGCCGGTGTTAAGGCCTCCCCCCTAACCTTTTTCTTAAA
CCCAGGGGGGGGTAAGCCCCCCCCCAGGGCCCGGCTGCCCCCCCAAAAAA
CCCCCTCTTGGGGAAGGGGGGAAAAATTTTTTTTTTTTTTCCAAAAAAAG
GGGGGGGTGTTTTTTTTAAACCCGGGGGCCCCTTTTTTTTCCCGGGGGAC
TCCTTGGGGAGGGGATTTTCTCCCTCCCCGGGGGGGGAAAATTAGGAAAC
CCCCCCGGGTGTTTTTTCCCCACGGGGGGGGGGAAAATTTTTTTTTTTTT
T
NNNAAATCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACACATATTTAAGGAAA
TGTGAACAATTGATAACTACTGGGAGATGGTGAGTGAATTTAATTTAATG
CTATGACCTCTGGTATACTACCCATAATCTAATAAAAAACTGTACAGCCA
AGGACATATGCCCAGCACAAATTATACCCCATGGGTTTAAAAGGAGACAG
AGAATGGAAATAAAACTGCATGAACAGGAAAAATAGAGAAAATAGTACTT
TTGTCTTCATTTAGAAAGCTGTGTATTTCAGGCTTCACACCACAGGTGAG
CTGTAATTGGAACTTAATAATAATAGCATCAAGTTTAATAAACAGATACT
GAGTAAGCAATGGGAAACTGAACAAGTAACCACATACTTAGATAAGATAT
CCTTGCAGTATGTTCTGCATACAATGAAAATAAATTCGGGATCCCGCCAA
GACTAGTCTGCACAGATGTGAGTATGGATTACAAAAGCTAACAGCTTCTG
GGACAGGCAGAAGCCATAGAGCTTCTGAGGCAGACCCCGTTTCAGGCTCT
GAATATCCAGGCACCTTCCCTGCCAGAGGAGAGGTGCCCGCCCGACCCTG
GAGGGTTTTGCCAGAGCACCTGGGGGAGCCATCTCATGGATCCCGCTGAG
ACTAGTCTGTGCAGGTAAGAGTGTTGACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no489_a04.g1 MSMg01no489_a04.g1 CHROMAT_FILE:
MSMg01no489_a04.g1 PHD_FILE: MSMg01no489_a04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:05 2005
         (636 letters)



>mm_chr17_55478017_55479052
          Length = 1036

 Score = 1230 bits (636), Expect = 0.0
 Identities = 636/636 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacacatatttaaggaaatgtgaacaattgataactactgggagatggtgagtgaattta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacacatatttaaggaaatgtgaacaattgataactactgggagatggtgagtgaattta 260

                                                                       
Query: 61  atttaatgctatgacctctggtatactacccataatctaataaaaaactgtacagccaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttaatgctatgacctctggtatactacccataatctaataaaaaactgtacagccaag 320

                                                                       
Query: 121 gacatatgcccagcacaaattataccccatgggtttaaaaggagacagagaatggaaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacatatgcccagcacaaattataccccatgggtttaaaaggagacagagaatggaaata 380

                                                                       
Query: 181 aaactgcatgaacaggaaaaatagagaaaatagtacttttgtcttcatttagaaagctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaactgcatgaacaggaaaaatagagaaaatagtacttttgtcttcatttagaaagctgt 440

                                                                       
Query: 241 gtatttcaggcttcacaccacaggtgagctgtaattggaacttaataataatagcatcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtatttcaggcttcacaccacaggtgagctgtaattggaacttaataataatagcatcaa 500

                                                                       
Query: 301 gtttaataaacagatactgagtaagcaatgggaaactgaacaagtaaccacatacttaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtttaataaacagatactgagtaagcaatgggaaactgaacaagtaaccacatacttaga 560

                                                                       
Query: 361 taagatatccttgcagtatgttctgcatacaatgaaaataaattcgggatcccgccaaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taagatatccttgcagtatgttctgcatacaatgaaaataaattcgggatcccgccaaga 620

                                                                       
Query: 421 ctagtctgcacagatgtgagtatggattacaaaagctaacagcttctgggacaggcagaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctagtctgcacagatgtgagtatggattacaaaagctaacagcttctgggacaggcagaa 680

                                                                       
Query: 481 gccatagagcttctgaggcagaccccgtttcaggctctgaatatccaggcaccttccctg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gccatagagcttctgaggcagaccccgtttcaggctctgaatatccaggcaccttccctg 740

                                                                       
Query: 541 ccagaggagaggtgcccgcccgaccctggagggttttgccagagcacctgggggagccat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccagaggagaggtgcccgcccgaccctggagggttttgccagagcacctgggggagccat 800

                                               
Query: 601 ctcatggatcccgctgagactagtctgtgcaggtaa 636
           ||||||||||||||||||||||||||||||||||||
Sbjct: 801 ctcatggatcccgctgagactagtctgtgcaggtaa 836


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)