BAC Information

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BAC

Clone NameMSMg01-490M03
Chromosome17 (Build37)
Map Location 71,797,823 - 71,798,502
singlet/doubletsinglet
Overlap genenone
Upstream geneDlgap1, Tgif1, LOC668724, LOC546695, LOC240156, Mylc2b, 2900073G15Rik, Myom1, Lpin2, Emilin2, LOC100043644, Smchd1
Downstream geneLOC100043879, Ndc80, LOC668740, Spdya, LOC623451, Wdr43, 4632412N22Rik, BC027072, Clip4, Alk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-490M03.T7 (MSMg01no490_m03.b1)MSMg01-490M03.TJ (MSMg01no490_m03.g1)
ACCAG568913AG568914
length763762
length of high quality
(start - end)
641 (74 - 714)679 (79 - 757)
definitionCHROMAT_FILE: MSMg01no490_m03.b1 PHD_FILE: MSMg01no490_m03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:26 2005CHROMAT_FILE: MSMg01no490_m03.g1 PHD_FILE: MSMg01no490_m03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXNAATCGAGAGAAGGCGCGGA
ATTCCAGATCCTACAACATAGGTGTGTGCAGCCATGGCTGGTTTATACAG
TGCTGGAGGATAAGCCATGACTTGTGCATGCCAAGCAAGTACTCGACCAA
TTGAGCTACACCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCA
GAAATCCACCTGCCTCTACCTCCCGAGTGCTGGGATTAAGGGCGTGCGCC
ACCACTGCCTGGCCATCCCCAGCACCAAATCAGCATTTAAACAACAAGCA
AAGCAAGAAGGAGAGTTTGTGTCTATAGCTCCAGCACTCTAGGGGTCAAG
GTGTGATCAGAGCCTGTGTCTATAGCTCCAGCACTCTAGGAGTCAAGGTG
TGATCACCCTGAGTTCAAGACCAGCCTGGGCTATATGTAAATTTCAGGCT
ACTTAGCAAACCTTGCTTCAAATGCCCAAATTAAAAACAAAACAAAACAA
AACAAAACCCCACAATTATCACCAAGTGTGCTGGTGTGTGCCTTTAATCT
CAGCCCCTCAGAAAGCAGAGACAAGCAGATATCTAAGTTTGAGGCCAACC
AGGATTTCATAATAAGGCCCTGTCTCAAAAAAACTACCCCTAGAAACACA
AATTTCTATATATGTATGTGTGTATGTATGTATGCATGCATGTAACTATT
ATGTATGTATGCATGTATTATTTGTGTGTGTCCAGTATGTACATGTGTGT
GCCCATGTGTTTA
CCCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGACTACACAG
AGAAACCCTGTCTCAAAAAACAAAAAACAAAAACAACTTTATTTTATGTG
TATTTATTATATGCATGTATGTTTTGTACCACATGCAGGGCTTTGCAGAT
GCTAGGCAAAGTCTCTACCCTTGAGTTACATCTCTTGCCCTAGGATACAT
TTGATTTTGGTAGGATTTTTTAATGGGTGAGAGGTTTTGAGATAGAGTTT
TACTATATATCCCATGCTGCCCTCATAGTCAGACTCCTTCTTCCTGTATC
CTTCAAGAAGATTGTTTTAAAGCACTGTATTGTTTTCTTATAGTGATCAC
TCAGGGTATGTCCGGCCATTACCAGTACCACGCAGTTTGAACAGTGACAT
TTCCTATTTTGGTGTTGGAGGCAAACAGGCTGTTTTCTTTGTTGGGCAAT
CAGCCAGAGTAAGTGAAAAATTTCCCTGAAAGTGAAACTAATCAAAATAT
TTTGGGTTTGACAAACCTCACTATTAGGAATTAATGTGCTTTTAACTCGT
TTGGCAGATGATAAGCAAGCCTATCGACTCCAAGGATGTTCATGAGCTGG
TGCTTTCTAAAGAAGATTTTGAGAAGAAGGAAAAAAATAAAGAGGCGATA
TATAGTGGATATATTAGAAACAGAAAGGTATAGTGCATTTTATAGCTTAA
TTACACACTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no490_m03.g1 MSMg01no490_m03.g1 CHROMAT_FILE:
MSMg01no490_m03.g1 PHD_FILE: MSMg01no490_m03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:26 2005
         (679 letters)



>mm_chr17_71797461_71798540
          Length = 1080

 Score = 1299 bits (672), Expect = 0.0
 Identities = 678/680 (99%), Gaps = 1/680 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    caggacagccaggactacacagagaaaccctgtctcaaaaaacaaaaaacaaaaacaact 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1042 caggacagccaggactacacagagaaaccctgtctcaaaaaacaaaaaacaaaaacaact 983

                                                                        
Query: 61   ttattttatgtgtatttattatatgcatgtatgttttgtaccacatgcagggctttgcag 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 982  ttattttatgtgtatttattatatgcatgtatgttttgtaccacatgcagggctttgcag 923

                                                                        
Query: 121  atgctaggcaaagtctctacccttgagttacatctcttgccctaggatacatttgatttt 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922  atgctaggcaaagtctctacccttgagttacatctcttgccctaggatacatttgatttt 863

                                                                        
Query: 181  ggtaggattttttaatgggtgagaggttttgagat-agagttttactatatatcccatgc 239
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 862  ggtaggattttttaatgggtgagaggttttgagataagagttttactatatatcccatgc 803

                                                                        
Query: 240  tgccctcatagtcagactccttcttcctgtatccttcaagaagattgttttaaagcactg 299
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802  tgccctcaaagtcagactccttcttcctgtatccttcaagaagattgttttaaagcactg 743

                                                                        
Query: 300  tattgttttcttatagtgatcactcagggtatgtccggccattaccagtaccacgcagtt 359
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742  tattgttttcttatagtgatcactcagggtatgtccggccattaccagtaccacgcagtt 683

                                                                        
Query: 360  tgaacagtgacatttcctattttggtgttggaggcaaacaggctgttttctttgttgggc 419
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682  tgaacagtgacatttcctattttggtgttggaggcaaacaggctgttttctttgttgggc 623

                                                                        
Query: 420  aatcagccagagtaagtgaaaaatttccctgaaagtgaaactaatcaaaatattttgggt 479
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622  aatcagccagagtaagtgaaaaatttccctgaaagtgaaactaatcaaaatattttgggt 563

                                                                        
Query: 480  ttgacaaacctcactattaggaattaatgtgcttttaactcgtttggcagatgataagca 539
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562  ttgacaaacctcactattaggaattaatgtgcttttaactcgtttggcagatgataagca 503

                                                                        
Query: 540  agcctatcgactccaaggatgttcatgagctggtgctttctaaagaagattttgagaaga 599
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502  agcctatcgactccaaggatgttcatgagctggtgctttctaaagaagattttgagaaga 443

                                                                        
Query: 600  aggaaaaaaataaagaggcgatatatagtggatatattagaaacagaaaggtatagtgca 659
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442  aggaaaaaaataaagaggcgatatatagtggatatattagaaacagaaaggtatagtgca 383

                                
Query: 660  ttttatagcttaattacaca 679
            ||||||||||||||||||||
Sbjct: 382  ttttatagcttaattacaca 363


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1080
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1070
Effective search space:   715830
Effective search space used:   715830
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)