BAC Information

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BAC

Clone NameMSMg01-491L18
Chromosome17 (Build37)
Map Location 47,286,602 - 47,287,297
singlet/doubletsinglet
Overlap genenone
Upstream geneMad2l1bp, Gtpbp2, Polh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203, A330017A19Rik, Tbcc, Prph2, Ubr2, LOC100043385, EG240110
Downstream geneTrerf1, Mrps10, Guca1b, Guca1a, EG545208, 1700001C19Rik, AI661453, Tbn, Ccnd3, Bysl, Trfp, LOC668463, Usp49, 1110002E23Rik, Frs3, Pgc, LOC100043405, Tcfeb, Mdfi, Foxp4, LOC383250, 1700122O11Rik, 1700067P10Rik, 9830107B12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491L18.T7 (MSMg01no491_l18.b1)MSMg01-491L18.TJ (MSMg01no491_l18.g1)
ACCAG569659AG569660
length734971
length of high quality
(start - end)		699 (36 - 734)---
definitionCHROMAT_FILE: MSMg01no491_l18.b1 PHD_FILE: MSMg01no491_l18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:44 2005CHROMAT_FILE: MSMg01no491_l18.g1 PHD_FILE: MSMg01no491_l18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTTG
TCCTCCTTAGAGGGTGAGACTTGAATTATTTATGTGAAATTTATTTTCAT
GATGAAAAACTTTAACCACACCCAGAAGATGAGATAGGACTACACTGATC
TCACTGCTACGAATTGCCGGAGAGATTTTGTCACACTATGGATGAAGCGT
CTTCCTGTATTTATGTGGGAAATGCATGTTGTTTGAAACGGCAGGGTGTG
GTTTAACAGGACCGGAGAGGGAGATGCGTGGGGAAGCCTGAGCACTCACG
TGGTCGTGCACGCCGCGCTGACGTAAAGTTCCTAGGATTTTGAAGTTCTG
GCTGTTCTTTGGCTTGTCTTATCGGTATCTCCCAGCGACAGGGGAGAGTG
TTTAGATTCTCAGTAGCCCAAAACAGCTGCACATGTTGATTCAAACCTGT
AACTCCAGAATGGAGACAGAGGGATTGAGAGCCTCACGTGTAACTGGCAA
CCAGGGCTCACTTTGATGCCAGACCGTGAATGGCCTCTTGGTACCTCACC
AACTCACAGCTGAGACCTCGGAGCCGTGTGACATTCAGTGAGAATTCAGT
GAGAAAGCTGAGAGGGCGGTGTGGGTGTTAGGACTTACCACTGCAGTGAC
CCTAGTCCTCCAAAGATTTAAGCACCTGTGAACAGCATGTATTTATCTAT
TTGTTTTTTATGTGTATGGGTGTTTGCCCAGGTG

GCCCGATGGCGGANAGNNNAAAGGAATACCCCAGCCAGANNNGANNNNNN
NNNGGAATACCAACAGAAAGANGGGGGAGGGAAAAAAGGAAAGAAGAGAG
AGAAAGGAAGGGGGGAGATTTAACCCCCAGAGAAAGGGGGGGAAGAGGAA
GAGAAAAAAGGAAAGAAGGAAAAAAGAAGAAGGGGGGGAGGAGAGGGAGA
GAAGGAGAAGGAGAGAAAAGGAAAGAGGAAAGAAGAAAAAAAAGAAGAGA
AAGGGGGGGAGAAGAAAAGAAAAAAAAAGTGATAGAAAAAAAAAGGGCAA
GGGAAAAAAAAGAAAAAAAAGACAAAAGAAGAAAGAAAAACAAAAAAAAA
CGAAAGGAAAAATTTTTTTTTTATGAAGAAAAACAGACAAAAACGGGAAA
AAAAAAACAAGAGAATTATGAGAAGAGAAGAAAAGAAGAAAAAAAGAGAA
AGAGAAAAAAAAGAGAAAAAAAAAAGAAATGAGGGGAGACCACAACAAAG
TAAAAGAAGAAGAAAGAAAAGAAAAAAACAAAGAAAAAAGAAAAGGAGGG
GGAAAAAAAGAAAAGAAAAAAGAGAAAGAAACAGGAAAGAAAACAAAAAA
GGGAAAATAAAAAAAAAAAGAAAAGAAAAAGAAACGAAAAAAAAAAAGAA
GAACAAGAAAAAAGAAAAAAAAGAGAGGGGGAAAAGAAAAGGAAAAGAGG
AAAAAGAAAGAAGAGGAGAAAAGAGCGGGAGAGAAGGCAAGAAGAGAAAG
AAGAAAAAGAAGAAGAACGAAGACAACAAAAATGAGGAAAACTGAGCAAA
GAAAGGACAAAAAAAAAGATTATAAACGACAAGAGAAGGAAAAAAACAGA
AAAGGAGGGATGACAAAGAGAGAGAGNAGAAGGGAAGAAGAAAGCAAGGA
TGAGGGAGGTGGAAACAAGGGGAACAGAGAAGTAAGGAAGAAAGAATAGC
AGACGGAGCGGAAGGGAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_l18.b1 MSMg01no491_l18.b1 CHROMAT_FILE:
MSMg01no491_l18.b1 PHD_FILE: MSMg01no491_l18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:44 2005
         (699 letters)



>mm_chr17_47286399_47287497
          Length = 1099

 Score = 1276 bits (660), Expect = 0.0
 Identities = 687/696 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgttgtcctccttagagggtgagacttgaattatttatgtgaaatttattttc 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgttgtccaccttagagggtgagacttgaattatttatgtgaaatttattttc 263

                                                                       
Query: 64  atgatgaaaaactttaaccacacccagaagatgagataggactacactgatctcactgct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atgatgaaaaactttaaccacacccagaagatgagataggactacactgatctcactgct 323

                                                                       
Query: 124 acgaattgccggagagattttgtcacactatggatgaagcgtcttcctgtatttatgtgg 183
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 324 acgaattgccggagagattttgtcacgctatggatgaagcgtcttcctgtatttatgtgg 383

                                                                       
Query: 184 gaaatgcatgttgtttgaaacggcagggtgtggtttaacaggaccggagagggagatgcg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gaaatgcatgttgtttgaaacggcagggtgtggtttaacaggaccggagagggagatgcg 443

                                                                       
Query: 244 tggggaagcctgagcactcacgtggtcgtgcacgccgcgctgacgtaaagttcctaggat 303
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 444 tggggaagcctgagcactcacgtggtcgtgcacgccgcactgacgtaaagttcctaggat 503

                                                                       
Query: 304 tttgaagttctggctgttctttggcttgtcttatcggtatctcccagcgacaggggagag 363
           ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 504 tttgaagttctggatgttctttggcttgtcttattggtatctcccagcgacaggggagag 563

                                                                       
Query: 364 tgtttagattctcagtagcccaaaacagctgcacatgttgattcaaacctgtaactccag 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgtttagattctcagtagcccaaaacagctgcacatgttgattcaaacctgtaactccag 623

                                                                       
Query: 424 aatggagacagagggattgagagcctcacgtgtaactggcaaccagggctcactttgatg 483
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aatggagacagaaggattgagagcctcacgtgtaactggcaaccagggctcactttgatg 683

                                                                       
Query: 484 ccagaccgtgaatggcctcttggtacctcaccaactcacagctgagacctcggagccgtg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 684 ccagaccgtgaatggcctcttggtacctcaccaactcacagctgagacctcggagccctg 743

                                                                       
Query: 544 tgacattcagtgagaattcagtgagaaagctgagagggcggtgtgggtgttaggacttac 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tgacattcagtgagaattcagtgagaaagctgagagggcggtgtgggtgttaggacttac 803

                                                                       
Query: 604 cactgcagtgaccctagtcctccaaagatttaagcacctgtgaacagcatgtatttatct 663
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 804 cactgcagtgaccctagtcctccaaagatttaagcacctgtgaacagtgtgtatttatct 863

                                               
Query: 664 atttgttttttatgtgtatgggtgtttgcccaggtg 699
           ||||||||||||||||||||||||||||||||||||
Sbjct: 864 atttgttttttatgtgtatgggtgtttgcccaggtg 899


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 699
Length of database: 1099
Length adjustment: 10
Effective length of query: 689
Effective length of database: 1089
Effective search space:   750321
Effective search space used:   750321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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