BAC Information

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BAC

Clone NameMSMg01-492A01
Chromosome17 (Build37)
Map Location 17,778,448 - 17,778,819
singlet/doubletsinglet
Overlap geneEG665140
Upstream geneLOC100041407, LOC665072, EG383211, LOC626785, LOC665085, BC002059, BC018101, Zfp97, EG382161, LOC676238, EG626854, LOC100041965, Riok2, Lix1, LOC383297, Lnpep
Downstream geneLOC100041519, EG626942, 4930546H06Rik, Has1, Fpr1, Fpr-rs2, LOC665183, LOC670250, EG665187, LOC546683, Fprl1, LOC627060, Fpr-rs4, EG637021, EG665210, Vmn2r92, EG665227, EG627132, LOC100041612, Vmn2r95, Vmn2r-ps114, EG433070
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492A01.T7 (MSMg01no492_a01.b1)MSMg01-492A01.TJ (MSMg01no492_a01.g1)
ACCAG569863AG569864
length711711
length of high quality
(start - end)
636 (76 - 711)370 (77 - 446)
definitionCHROMAT_FILE: MSMg01no492_a01.b1 PHD_FILE: MSMg01no492_a01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:06 2005CHROMAT_FILE: MSMg01no492_a01.g1 PHD_FILE: MSMg01no492_a01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATGGCCATTTCTTTTCAATTTAACTTTTTGAAGATGCTTCCA
TTGAAAGTGATAGTTTGCTGCAGACCCTCTGGGCCGCTTTGTCTGCGTGG
AATGGGTCTCTAGTCGCAGGTGGGCAAAGCGTTGGATGGAATGACAGACA
GATGCACACAGGAGAGGTTGTGTAGAATCTGAATGTAATTTGTCAAATCG
AGCATCAAACTTTTTATGCTGAAGAAAATAGGGAAGTTGGGTGACACACC
CGCAAGGTACAAAGAGGTTATTGGATTCTTACACAAAACAGAGGAATACA
AACACAGAAGGTCTAACAGGAACCACCTGGGATAGAATTCATTGTTAACA
ACTGGGATCAAAAAGAGCTCCACCTAAGATTTACTTAATCTTAGAAGCTA
GGGTCAAGGGCTTCGTGCCCTTGCCATAGTTCCTATTTTAGTCTATTGTA
TAGTCCACCTTCCTCCTAGGCCATTGTAAATATGTGTGTATGGGTGTAAC
TCAGCTATCTATAGTTCTAAGTATCTATTTTGGTTCCTCTTTAGGTCTCA
AACCTCTTTCTTCCTAGAAGATGGTAAATTCCTGTGTAGGGCAGTGACTT
AGCTTTTATTCAAAGTGATAGTGTAATACCAGAGGCAATTCTGAATGTCA
CTGAATAGGCN
NCGATGCTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCATTTACAGATAAATTATCT
ATAAATTATTATTATCTCCAAGCTTGATGGTGTGATAGCAGAAGCTAAAA
CTTCACTTACTGGTTTTAGTCGTATTCTGGCTGAAACTGGCTCTTTTCAC
AGGATAATTGCAGTAATAGATTTTTGTAACAACCCAGTCAAGGATGGGCT
CCCCCCGTTTTGAGGAACCACTGTTCAAAGTCAACTTTTCAATCAGTATA
ATGTAGAGAGACTCTTGTGCACTGTGTAAAGTATTCTACTGTCAATAAAA
AAGCCTTTGGCCAATGAGCTGAGGTAGGAAATAGGAGGTGGGAGTTCCTG
AGAATGGATAGGGGAATTCTGGGAAAGAGGAAGGCGTTGGAGATTCACCA
CGTCAGAGAGGAAGACAGTTGCATAAACCTGAGTAACTAACCAGTAAGAG
AACTTAGATTAGAATAAACTGGGTTTTTGAGGTGTGAGCTAGTCAAGGAA
CAGAGCCAGGATTATTGGCCTACGCATGTATTAAGTAAATAATTAGTCTC
AGAGTCATTATTTCTGGGAACTAAGTGATCAGGAGGAAAAGTTTAGAGTA
ACAGTTTAAGGAGAAAGAACAGATACATTGGACTTTCTAACATGCCAGAG
GCACTGCCATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_a01.g1 MSMg01no492_a01.g1 CHROMAT_FILE:
MSMg01no492_a01.g1 PHD_FILE: MSMg01no492_a01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:06 2005
         (370 letters)



>mm_chr17_17778395_17779164
          Length = 770

 Score =  669 bits (346), Expect = 0.0
 Identities = 365/372 (98%), Gaps = 2/372 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttcatttacagataaattatctataaattattattatctccaagcttgatggtgtgat 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 425 ttttcatttacagataaattatctgtaaattattattatctccaagcttgatggtgtgat 366

                                                                       
Query: 61  agcagaagctaaaacttcacttactggttttagtcgtattctggctgaaactggctcttt 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 365 agcagaagctaaaacttcacttactggttttagttgtattctggctgaaactggctcttt 306

                                                                       
Query: 121 tcacaggataattgcagtaatagatttttgtaacaacccagtcaaggatgggctcccccc 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 305 tcacaggataattgcagtaatagatttttgtaacaacccaggcaaggatgggctcccccc 246

                                                                       
Query: 181 gttttgaggaaccactgttcaaagtcaacttttcaatcagtataatgtagagagactct- 239
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| 
Sbjct: 245 gttttgaggaaccactgttcaaagtcaacttttcaattagtataatgtagagagactctc 186

                                                                       
Query: 240 -tgtgcactgtgtaaagtattctactgtcaataaaaaagcctttggccaatgagctgagg 298
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ttgtgcactgtgtaaagtattctactgtcaataaaaaagcctttggccaatgagctgagg 126

                                                                       
Query: 299 taggaaataggaggtgggagttcctgagaatggataggggaattctgggaaagaggaagg 358
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 125 taggaaataggaggtgggagttcctgagaatggataggggaattctgggaaagaagaagg 66

                       
Query: 359 cgttggagattc 370
           ||||||||||||
Sbjct: 65  cgttggagattc 54


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)