BAC Information

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BAC

Clone NameMSMg01-492A18
Chromosome17 (Build37)
Map Location 27,186,046 - 27,186,241
singlet/doubletsinglet
Overlap genenone
Upstream geneRab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229, EG240055, C230078M08Rik, Dusp1, EG666668, Ergic1, Atp6v0e, A930001N09Rik, Bnip1, Nkx2-5, Kifc1, Phf1, Cuta, Syngap1, Zbtb9, Bak1, Ggnbp1
Downstream geneItpr3, 2900010M23Rik, Ihpk3, Lemd2, LOC100042713, ENSMUSG00000073430, Grm4, LOC677010, Hmga1, AI413582, Nudt3, Rps10, Pacsin1, Spdef, LOC100042744, D17Wsu92e, EG666682, Snrpc, F830021D11Rik, Taf11, Anks1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492A18.T7 (MSMg01no492_a18.b1)MSMg01-492A18.TJ (MSMg01no492_a18.g1)
ACCAG569897AG569898
length808714
length of high quality
(start - end)
72 (70 - 141)195 (322 - 516)
definitionCHROMAT_FILE: MSMg01no492_a18.b1 PHD_FILE: MSMg01no492_a18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:10 2005CHROMAT_FILE: MSMg01no492_a18.g1 PHD_FILE: MSMg01no492_a18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATTTGCGGCGCTATACGACTCACATTTGCAGAAGATGGCGGNAATCCCA
GTTTTGCTGAACACAGACCCACCAATCTTTTAGTTCCTTTCTTGTACGTT
ATTCTGTATCCACTTTCTCTGCATCTGATTAAATCGCTGATTAGGTTCTC
TTTTATTTTTGGTATGACATCACCACAAATATATATCATTGGCTGATGCT
TTGGGAGTTGAATGTCTTTCTGGGTGCCCACTGTTAGTGCCTCTGCAGTT
CAAAGAAGCATCCCCTTTCCATGCACACAAACTTTTCTCTAAGTTAGTTA
TTTTTTTTTACTGTTGNAACAAAATACTCAACAAAAAAACACTCCATGAA
ATGAAGAGTATTGAAAGATATTTGATCACCCTTTTGAACCCCAAGATTGC
ATTAATTTATCCAAAAACTCCTGTTCTAGTTTGTGGGGTCTTTTCCAGCC
TTTAACACCACACCTCCTAATCCCCAAACATTTGAAAGGTAAAGGTTAAT
TTTAACCCATGTTTAAAAAAGTGATATCCCTAATTGGAGGGGGCAAAAAC
AAAGGGGTGGTGAACCCCTTTGAAAAAATATTTGTTCCGCTCCTGGGACC
CCCCCCCCTAAAAATGGGAAGGACTCTTCAAACGTAAAAAAAAAATATAG
GGTTTTTTAGAATTTTTTTCACTTATGAAAAAAACCCCCCTTTCTATAAC
CTCCCATGGGTTGCGCTACAACAATTTCATCCCTATTTTTTTTTGTGAGG
ACCACTGAGGCTCTACCCACCTCCTCTCCCATCTGTAGGGCAAATTTATT
TTCCTCTN
CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTCCAGAAATTCAATTCCCAGCAACCACATGGTGGCTC
ACAACCATCTGTAATGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAAAG
AGCAATGGTGTACTCATCATATAAATAAAAAATAAACCTTTAAAAAAAAA
AAAAAAAAAGAGCTCCACAAGCCAGGCCCCAAATCCCCTAGATCACTGAG
TAACGAGTCTGGGATGTTGACACCTTGAGTCAAGTGTCTGGGTTGAGGCG
TGGAGGGGATTGGGTCTTTTTCACCCTCAGCCTGATACCCAGATGGGCTT
GAAGGGAGCTCCCCGGGGAGGGGGCCACACAGGCATCTGTGGATCTGTCC
AGGTCTCTGTCCGGGTCTCTGTGCCTCACTGCCAAGGAGTCAGAAGACAT
GGACCCTGGGTCTGGGAAATTTGTAGCGAAGGAAAACTACCTGGAGAACT
TCCCAGGGCCTGGTTGGGCAGGACCAGGCCTTGATTGACAGGAGGCAAAA
CACTGATGCCAAGTCTACCTGGGATTGGTTCTGGCCTCCAGCTGCGCCCA
CACCTCCCTTGGCAGGAAGGAAGTGTTCAAGCCAGTCTTGCCCAAACAGC
CTGGCCTGGCCTGAAAACTGTTAAAACATGCGTGGACATCCACTCTACGG
TGTCTTCTCCCACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_a18.g1 MSMg01no492_a18.g1 CHROMAT_FILE:
MSMg01no492_a18.g1 PHD_FILE: MSMg01no492_a18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:10 2005
         (195 letters)



>mm_chr17_27185846_27186441
          Length = 596

 Score =  356 bits (184), Expect = e-103
 Identities = 193/196 (98%), Gaps = 1/196 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caccctcagcctgatacccagatgggcttgaagggagctccccgggga-gggggccacac 59
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 396 caccctcagcctgatacccagatgggcttgaagggagctccccggggaggggggccacac 337

                                                                       
Query: 60  aggcatctgtggatctgtccaggtctctgtccgggtctctgtgcctcactgccaaggagt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 aggcatctgtggatctgtccaggtctctgtccgggtctctgtgcctcactgccaaggagt 277

                                                                       
Query: 120 cagaagacatggaccctgggtctgggaaatttgtagcgaaggaaaactacctggagaact 179
           |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 276 cagaagacatggaccctgggcctgggaaatttgtagctaaggaaaactacctggagaact 217

                           
Query: 180 tcccagggcctggttg 195
           ||||||||||||||||
Sbjct: 216 tcccagggcctggttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 596
Length adjustment: 8
Effective length of query: 187
Effective length of database: 588
Effective search space:   109956
Effective search space used:   109956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)