BAC Information

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BAC

Clone NameMSMg01-493J21
Chromosome17 (Build37)
Map Location 20,652,055 - 20,652,682
singlet/doubletsinglet
Overlap genenone
Upstream geneEG627537, EG627576, EG224572, EG627618, EG627636, LOC100042273, LOC210465, LOC670534, EG627664, V2r7, LOC100041856, EG545190, Fpr-rs7, Fpr-rs6, EG627743, EG224576, V2r6, EG637720, EG665525, EG627805, V1re5
Downstream geneEG627814, EG381065, EG224582, Fpr-rs3, EG433073, V1re2, V1re6, LOC100041976, V1re3, V1re1, V1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54, Zfp51, Zfp53
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-493J21.T7 (MSMg01no493_j21.b1)MSMg01-493J21.TJ (MSMg01no493_j21.g1)
ACCAG571092AG571093
length747763
length of high quality
(start - end)		677 (46 - 722)628 (75 - 702)
definitionCHROMAT_FILE: MSMg01no493_j21.b1 PHD_FILE: MSMg01no493_j21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:13 2005CHROMAT_FILE: MSMg01no493_j21.g1 PHD_FILE: MSMg01no493_j21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGAACATTTTTTCAAGTGCTTCTCAGCCATTTGGTATTCCTTAGG
TGAGAATTCTTTGTTTAGCTCTGAGTCCCATTTTTTAATGGGGTTATTTG
ATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGT
CCACTATCTGATTTAGAATAGGTAAAGATCCTCTCGCAATCTGTTAGTAG
CCTTTTTGTCTTATTGATGGTGTCTTTTGCCTTGCATAAGCTTTGCAATT
TTATAGTATCCCATTTGTCAATTCTCAATCTACAGGACAAACCATTGCTC
TTCTATTCAGGAATTTTTCCCCTGTACCCATATTTTCAAGGCTTTTACCT
ACTTTCTCCTCTATAAGTTTCAGTGTCCCTGGTTTTATGTGGAGTTCCTT
AATCCACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTT
GCATTCTTCTACATGATAACCTCCAGTTGTGCCATCACCATTTGTTGAAA
ATGCTGTCTTTTTTTTCCGCTGGATGGTTTTTTGCTCTCTTGTCAAAGAT
CAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTGCAATTCTATTGA
ATTGGTCTGTAGTCTGTCCCTATACCAGTTCCATGCAGTTTTTATAACAA
TTGCTCTATAGTACAGCTTTAGGTCAGGCATGGTGATTTCATCAGAG

ATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAACTTAACATCCAAGTGACATACTAG
AACGAGGGCTACTGCTAAACATGAAAAACAAATCCAAAAATCTCTGCCTA
CATAAAATTACTGTTTGTACAATTCCAAGATCTTAGTAAATTTCAGACCG
TTTGATGGTTATGTTGCCTACTGGAGAACCTGTCTTGGCCTGACTGTCAT
TCTACTCTCGGAACTGTAAATATAAAGAAGTCTTCATCTACTACAAATTT
GTTGGTGTGCAATATATTGCCAACTAATTTGTTTTGTATGACTTAAGTCA
TTGGTAGACCACTTGTCTATCAGAAAAAGAAACATTAATGCACAAAACAT
GAATACTTTTTTAGAATCCTGCCTGATTACCTTTCTTGTTTGTCTTACTT
AAATCAAGGACCCTTTCCTGTGATGAGATGAGATATAAGTAAAATCTAGC
ATCCTAAATAGTATGTTGAATTATCAAATCTTGGAAAGATATGGGAGCTT
AAGTCAGCAGTTAGACAGAAGACTTCTGCCTAACTGCTCACCAATTCTCT
ATCACATTCAACTTTTCAACATTGAGATTCTTAGGGGGCAGAGATTATAT
CTTAAAACATTAGATTTTAAATCTATTCACTAATTTATGAACAATGAATT
CTCACCATGACCTAATAGGAAATGACTAGTTTTCTCAAGTTTCTATTCCA
TGTAAACACTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no493_j21.g1 MSMg01no493_j21.g1 CHROMAT_FILE:
MSMg01no493_j21.g1 PHD_FILE: MSMg01no493_j21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:14 2005
         (628 letters)



>mm_chr17_20651855_20652882
          Length = 1028

 Score = 1106 bits (572), Expect = 0.0
 Identities = 614/628 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacttaacatccaagtgacatactagaacgagggctactgctaaacatgaaaaacaaatc 60
           ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 828 aacttaacatctaagtgacatactagaacgagggctactgctagacatgaaaaacaaatc 769

                                                                       
Query: 61  caaaaatctctgcctacataaaattactgtttgtacaattccaagatcttagtaaatttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 caaaaatctctgcctacataaaattactgtttgtacaattccaagatcttagtaaatttc 709

                                                                       
Query: 121 agaccgtttgatggttatgttgcctactggagaacctgtcttggcctgactgtcattcta 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 708 agaccgtttgatggttatgttgcctactggagaacctgtcttggcctgcctgttattcta 649

                                                                       
Query: 181 ctctcggaactgtaaatataaagaagtcttcatctactacaaatttgttggtgtgcaata 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 648 ctcttggaactgtaaatataaagaagtcttcatctactacaaatttgttggtgtgcggta 589

                                                                       
Query: 241 tattgccaactaatttgttttgtatgacttaagtcattggtagaccacttgtctatcaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 tattgccaactaatttgttttgtatgacttaagtcattggtagaccacttgtctatcaga 529

                                                                       
Query: 301 aaaagaaacattaatgcacaaaacatgaatacttttttagaatcctgcctgattaccttt 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 528 aaaagaaacattaatgcacaaaacatgaatacttttttagaatcttgcctgattaccttt 469

                                                                       
Query: 361 cttgtttgtcttacttaaatcaaggaccctttcctgtgatgagatgagatataagtaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 cttgtttgtcttacttaaatcaaggaccctttcctgtgatgagatgagatataagtaaaa 409

                                                                       
Query: 421 tctagcatcctaaatagtatgttgaattatcaaatcttggaaagatatgggagcttaagt 480
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 408 tctagcatcctaaatagtatgttgaattatcaaatcttggaaagatatggaagcttaggt 349

                                                                       
Query: 481 cagcagttagacagaagacttctgcctaactgctcaccaattctctatcacattcaactt 540
           |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 348 cagcagttaggcagaagacttctgcctaactgctcaccaattctctatcatattcaactt 289

                                                                       
Query: 541 ttcaacattgagattcttagggggcagagattatatcttaaaacattagattttaaatct 600
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 288 ttcaacattgagattcttagggggcaaagattatatcttaaaacattagattttaaatct 229

                                       
Query: 601 attcactaatttatgaacaatgaattct 628
           ||| ||||||||||||||||||||||||
Sbjct: 228 atttactaatttatgaacaatgaattct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space:   629124
Effective search space used:   629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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