BAC Information

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BAC

Clone NameMSMg01-495P01
Chromosome17 (Build37)
Map Location 62,622,668 - 62,622,905
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043560
Downstream geneEfna5, Fbxl17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495P01.T7 (MSMg01no495_p01.b1)MSMg01-495P01.TJ (MSMg01no495_p01.g1)
ACCAG572865AG572866
length627729
length of high quality
(start - end)
101 (94 - 194)239 (78 - 316)
definitionCHROMAT_FILE: MSMg01no495_p01.b1 PHD_FILE: MSMg01no495_p01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:06 2005CHROMAT_FILE: MSMg01no495_p01.g1 PHD_FILE: MSMg01no495_p01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCCTTTTTCTCCTTTCCCGCCCCNNNNNGGTGTCTTTTACTATCTATAA
XXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAGACCGCGGAATTCTAT
CTCTTCTCCAAAAAAAAGAAACCTAATGAGGAGTTTGAGGGAGACATGAT
TCATACACATACATTTCTAGCCTCCTAAACATAAAATTATAAAATTCTAT
TTTTCTTTTTTAATTTTAATTTATTTTTTAAAAATAGTTTAGAAGTGTGC
AAAGATGAGCAGACAATTCCCTCATTCACCTGGGCCCTACCTTTTTTACT
GCTATTATTTTTTGGGAAGTTTAAAATAAGGAAACCTCTTTTTCTCAGAA
ATTTAAAAACCAAAATTTTTTTTTTTTTGGGCTTTTGTTTCCCCGGGACA
TTCCTCACAAAAAACTTTTATACTCCTAGGTGTAATGGGCCCCCGGTAAA
TCTTGTTTTTTAATATGGGGGGGGAAAATTTTAAAATACCTCTATTCCCG
TTTTCCCAAATTTTTTTTTTTTCATAAAAAAAACCCGCGGGGGGTTATTA
GAAAAAAAATTTTCTTTTTCTCGTGGTAAAAAGCGCTTTTTTCCCCCTCT
TTTTTTTATTCCGGCGTCCCTTCCCTC
NNAAACGATGAAGTGTGAGGCCTGGNGGNCGCCTGGATCAATACAGGAGG
TGAACTATAGAAGTGCGAAAAAAATCGCTGACCTAAGACCAAGCAGACCC
ATGTGTCTATTCTTCAGTTTTGAATTTGTTAGTGCCTTTGCTTAGCCTTC
CATATTGAACTGCAAAAGCCATGGCTGCTTGCCTCCCTCTCTCTTCCTCT
TTCCCTCCTTCTTTCCTATCTTCCTTCCTTTGAAGTGCATGTTCACCTAT
TTTTGAAGTCTTTTGTGTATTCACTGTCCCTCTTAGAGTAACCACTTCAA
TAAAATATGTGTATGATTGATTTCTTATTGCCCATGTTTGAATCCAAATA
AGATCTCCGTGCATATCTTCCTGTCATATTAACTGGCTTCTTATTGCTTT
TCTCTGCCATGTGACCCCACTGAACATCTTCAGAACTCTTGCAACATTAG
ATATTATCTTATTTATTTTGTATTGATTTATGTCTCTCTTACCTTGTAAC
ACAGGGTCAGAAGAGAGCCATTATCACCATCATCATTAGGATGCACTGTT
CCTTCTGAGTATCTAGGACAGTGTCAACCCATAGGACCTGTTGGAGAGCT
GTTTTAAGAATGGAAGCCAACATGAGTTGTAACAAATTTGACACACTGTT
CTTGCTGAGGGTTTCTTTCTTTCCGTTTTTTTTTCTCCTGCCATCACCTC
TCTAATGACTCTTTAAAAATATTTTCAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_p01.g1 MSMg01no495_p01.g1 CHROMAT_FILE:
MSMg01no495_p01.g1 PHD_FILE: MSMg01no495_p01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:07 2005
         (239 letters)



>mm_chr17_62622591_62623229
          Length = 639

 Score =  424 bits (219), Expect = e-123
 Identities = 234/239 (97%), Gaps = 1/239 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgacctaagaccaagcagacccatgtgtctattcttcagttttgaatttgttagtgcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 315 ctgacctaagaccaagcagacccatgtgtctattcttcagttttgaatttgttagcgcct 256

                                                                       
Query: 61  ttgcttagccttccatattgaactgcaaaagccatggctgcttgcctccctctctcttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ttgcttagccttccatattgaactgcaaaagccatggctgcttgcctccctctctcttcc 196

                                                                       
Query: 121 tctttccctccttctttcctatcttccttcctttgaagtgcatgttcacctatttttgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||
Sbjct: 195 tctttccctccttctttcctatcttccttcctttgaagtgcatgttcacctaacattgaa 136

                                                                      
Query: 181 gtcttttgtgtattcactgtccctcttagagtaaccacttcaataaaatatgtgtatga 239
           ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 gtc-tttgtgtattcactgtccctcttagagtaaccacttcaataaaatatgtgtatga 78


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)