Query= MSMg01no496_a14.b1 MSMg01no496_a14.b1 CHROMAT_FILE:
MSMg01no496_a14.b1 PHD_FILE: MSMg01no496_a14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:14 2005
(682 letters)
>mm_chr17_77918927_77920016
Length = 1090
Score = 1195 bits (618), Expect = 0.0
Identities = 669/690 (96%), Gaps = 8/690 (1%)
Strand = Plus / Minus
Query: 1 tttatatggtagcactgaaaaaatcatcatgtagcttt------agtgctgtgtggt--g 52
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 890 tttatatggtagcactgaaaaaatcatcatgtagctttatattgagtgctgtgtggtgag 831
Query: 53 agactgtgagacacagatgatagcatacagatatcttggtgattgactgctgtgaaatgt 112
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 830 agattgtgagacacagatgatagaatacagatatcttggtgattgactgctgtgaaatgt 771
Query: 113 tcatatctccaacctttggccaggcaattagccaatcatcaagcaatgtgaagtcgtttg 172
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 tcatatgtccaacctttggccaggcaattagccaatcatcaagcaatgtgaagtcgtttg 711
Query: 173 gacttagaagaaaacatatctcaggacttatgtgattgaaacttcattaagatatatatt 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 gacttagaagaaaacatatctcaggacttatgtgattgaaacttcattaagatatatatt 651
Query: 233 tggagtaattttagctgactgatattcagcgaagagattaaaatggatagaggagtgaaa 292
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 650 tggagtaattttagctgactgatattcagtgaagagattaaaatggatagaagagtgaaa 591
Query: 293 accaataaattaaagacggcattgtataatactctagcttaaaagttagtctggaaagat 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 accaataaattaaagacggcattgtataatactctagcttaaaagttagtctggaaagat 531
Query: 353 tggaagagattagccaattcagctgcacaggggaacagtgtaatcagtgctgaggttaag 412
|| ||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||
Sbjct: 530 tgtaagagattagccaattcagctgcacagaggaacggtgtaatcaatgctgaggttaag 471
Query: 413 gcactaggggctgcagtggttaatgtaagttacgatatgaaacaaaggcttcaaaatagt 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gcactaggggctgcagtggttaatgtaagttacgatatgaaacaaaggcttcaaaatagt 411
Query: 473 aaggccaaaactgaaattacgtcgacacatgaagattttaacttgggacagagatacaca 532
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 410 aaggccaaaactgaaattacgtcgacacatgaatattttaacttgggacagagatacaca 351
Query: 533 gatgctagtcaaactgattttacagatgaagatcaggaaatggaaaataaatttctcgct 592
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 350 gatgctagtcaaactgattttacagatgaagatcagaaaatggaaaagaaatttctcgct 291
Query: 593 tccatgctgtaaatataaggaatcattgcactaagcatagaagggtaagtgaagggtaag 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 290 tccatgctgtaaatataaggaatcattgcactaagcatagaagggtaagtgaaggttaag 231
Query: 653 ttccaaggtttcctccatttgagcttggat 682
||||||||||||||||||||||||||||||
Sbjct: 230 ttccaaggtttcctccatttgagcttggat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1090
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1080
Effective search space: 725760
Effective search space used: 725760
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no496_a14.g1 MSMg01no496_a14.g1 CHROMAT_FILE:
MSMg01no496_a14.g1 PHD_FILE: MSMg01no496_a14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:14 2005
(666 letters)
>mm_chr17_77722091_77723156
Length = 1066
Score = 1125 bits (582), Expect = 0.0
Identities = 646/672 (96%), Gaps = 17/672 (2%)
Strand = Plus / Plus
Query: 1 tcccattttgatagagaattctgttaagtttctcattttaagggagtagaggctgacttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 tcccattttgatagagaattctgttaagtttctcattttaagggagtagaggctgacttt 265
Query: 61 taagagtgaatcaagccaggcagtgatggtgcatgcctttaatcccagcgtttgggaggc 120
||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 266 taa-agtgaatcaagccaggcagtggtggcgcatgcctttaatcccagcgtttgggaggc 324
Query: 121 agaggcaggcagatttctgagttct-aggccaacctggtctacagattgagttctaggac 179
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 325 agaggcaggcagatttctgagtt-tgaggccaacctggtctacagattgagttctaggac 383
Query: 180 agccagctacacagagaaaccctgtctcaaaaaacaaaacaaaacaaaacaaacaaacaa 239
|| ||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||
Sbjct: 384 agtcagctacacagagaaaccctgtctcaaaaaacaaa-caaa-caaa-caaacaaacaa 440
Query: 240 aaaaac----ccatttttacaaaagagtgaatcagttgaattagaaacaaaccacattta 295
|||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaaacaaaacaa-----acaaaagagtgaatcagttgaattagaaacaaaccacattta 495
Query: 296 tcatgtagagatgtgtccatacaaacaatgccaaaagagtttaattaagcatccttcatt 355
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 496 tcatgtagagatctgtccatacaaacaatgccaaaagagtttaattaagcatctttcata 555
Query: 356 tccttgttactattacaatgaatctttttttttatttaattatcaagttaaactcacctt 415
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 556 tccttgttactattacaatgaatctttttttt-atttaattatcaagttaaactcacctt 614
Query: 416 catatgttagcactcagagaatcatgcctactcttatttccatgtacttaacacattcaa 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 catatgttagcactcagagaatcatgcctactcttatttccatgtacttaacacattcaa 674
Query: 476 acacatttaaatttgtcaggttttagttctttctaggtagtacatacgatgtagttaatt 535
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 675 acacatttaaatttgtcaggttttagttctttctaggtagtacataagatgtagttaatt 734
Query: 536 ctcaagaaaaa-ttttctgaataaatgatcttgagatcaagtcatttggaatagtttcat 594
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 ctcaagaaaaaattttctgaataaatgatcttgagatcaagtcatttggaatagtttcat 794
Query: 595 tagggccgtagactaaaatactctcaaatgacttctgaaaataaaatctttcacagaagg 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 tagggccgtagactaaaatactctcaaatgacttctgaaaataaaatctttcacagaagg 854
Query: 655 aatgtattctca 666
|||||||||||
Sbjct: 855 gatgtattctca 866
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space: 692736
Effective search space used: 692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
