Query= MSMg01no497_c06.b1 MSMg01no497_c06.b1 CHROMAT_FILE:
MSMg01no497_c06.b1 PHD_FILE: MSMg01no497_c06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:43 2005
(648 letters)
>mm_chr17_43370440_43371487
Length = 1048
Score = 1052 bits (544), Expect = 0.0
Identities = 611/650 (94%), Gaps = 31/650 (4%)
Strand = Plus / Plus
Query: 1 aataggttaaaatgtattgctgttacctttgagctttcttgaaagaacactctgcagtta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aataggttaaaatgtattgctgttacctttgagctttcttgaaagaacactctgcagtta 260
Query: 61 gcattatccgcctctaccctctgctgaagcatcatggtacactcttctcccattttacaa 120
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 gcattatcctcctctaccctctgctgaagcatcctggtacactcttctcccattttacaa 320
Query: 121 acatgttttcacagaccatccactccttggcattgtgtctgtttccatgtgctggcctgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acatgttttcacagaccatccactccttggcattgtgtctgtttccatgtgctggcctgt 380
Query: 181 ttggttatgcccggttgacccacctgaaagataagctttggtaagcctgaaggttcacat 240
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 ttggttatgcccggttgacccacctgaaagataagctttggtaggcctgaaggttcacat 440
Query: 241 ct-ataattttggaccgggaggccgagagaaagaggtttcttcaagcttggggtcagcca 299
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 -tcataatcctggaccgggaggccgagagaaagaggtttcttcaagcttggggtcagcca 499
Query: 300 tggctgcatggtgaggtccaggccatgggaggctacagagtgagattctgtctcaacaaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tggctgcatggtgaggtccaggccatgggaggctacagagtgagattctgtctcaacaaa 559
Query: 360 acaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaa 419
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 acaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaa------------------- 600
Query: 420 acaaaacaaaagtagccaaatgaataagtagtgaagtctataagaacacaaattatgtct 479
||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 601 -------aaaagtagccaaatgaataagtagtgaagtctataagaacacaaattttg-ct 652
Query: 480 -actttgctgtttgttaccgcccctccacaaacctagaaaataaatgacattatgtttac 538
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 653 tactttgctgtttgttacc-cccctccacaaacctagaaaataaatgacattatgtttgc 711
Query: 539 tgataaataattattttttaaaaagttctgcagcaagtcagttgtaggctgctaaatcac 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 tgataaataattattttttaaaaagttctgcagcaagtcagttgtaggctgctaaatcac 771
Query: 599 ttccccagtcttttgagtccagatttgacacatctttaaccttctgtaat 648
||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 772 ttccccagtcttttgagtccagatttgacacatctttcaccttctgtaat 821
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no497_c06.g1 MSMg01no497_c06.g1 CHROMAT_FILE:
MSMg01no497_c06.g1 PHD_FILE: MSMg01no497_c06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:43 2005
(655 letters)
>mm_chr17_43561365_43562419
Length = 1055
Score = 816 bits (422), Expect = 0.0
Identities = 446/454 (98%), Gaps = 3/454 (0%)
Strand = Plus / Minus
Query: 203 taggtagagggcccagagctacatgagacagtggaaagctaagttttatattagcagcaa 262
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 1055 taggtagagggcccagagctacatgagacagtggaaagctaagtgaga-attagcagcaa 997
Query: 263 gaagcaggcagtatagatgaactcattcatctctggttttgactgtggttatgatatgtt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 996 gaagcaggcagtatagatgaactcattcatctctggttttgactgtggttatgatatgtt 937
Query: 323 tagctgcttgagcctctgcctttactgccacaaaatgacagactgtgacctgctatttta 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936 tagctgcttgagcctctgcctttactgccacaaaatgacagactgtgacctgctatttta 877
Query: 383 aggcagacaaaccctttcttcaaagctagagaagtttaaaattctctgagctcagccttg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 aggcagacaaaccctttcttcaaagctagagaagtttaaaattctctgagctcagccttg 817
Query: 443 aggtaggct-ccccagtgatgttagaagtcttatctgtgtaggaaaaacctagtcatttg 501
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 aggtagg-taacccagtgatgttagaagtcttatctgtgtaggaaaaacctagtcatttg 758
Query: 502 gggccagtactgttcactgggaagaaggtgctgagctacacgacacagcagaatgtgaga 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 gggccagtactgttcactgggaagaaggtgctgagctacacgacacagcagaatgtgaga 698
Query: 562 ctgcctgaagaacagacctgatccagcaacctcttctggattgctcttagtgaatggatg 621
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 697 ctgcctgaagaacagacctgaaccagcaacctcttctggattgctcttagtgaatggatg 638
Query: 622 ccaccaaatgctatccgaatcatttctactcaag 655
||||||||||||||||||||||||||||||||||
Sbjct: 637 ccaccaaatgctatccgaatcatttctactcaag 604
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space: 674025
Effective search space used: 674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
