BAC Information

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BAC

Clone NameMSMg01-499C05
Chromosome17 (Build37)
Map Location 63,785,432 - 63,786,075
singlet/doubletsinglet
Overlap geneFbxl17
Upstream geneEfna5
Downstream genePpia-ps17_1026.1, LOC638867, LOC668677, A930002H24Rik, Fert2, LOC669778, Pja2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-499C05.T7 (MSMg01no499_c05.b1)MSMg01-499C05.TJ (MSMg01no499_c05.g1)
ACCAG575293AG575294
length810747
length of high quality
(start - end)
254 (71 - 324)642 (64 - 705)
definitionCHROMAT_FILE: MSMg01no499_c05.b1 PHD_FILE: MSMg01no499_c05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:27 2005CHROMAT_FILE: MSMg01no499_c05.g1 PHD_FILE: MSMg01no499_c05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAATCCGCGGA
ATTCACAAAAAGGCATACGGCTAGGCACAACTGTGAGGGGTTTCTCTTAA
TTAATTCATTTGAAGTGGGAAGGCCCACTTCTAATTCGGATCTTAGACCT
GGGAAGATCCACCCGTAATCTGGGCCACAGCTTCTGCTGGCAGCCTGGAT
AAAAGACATGGAAAACGGAAGCTTGCTCTCTTTACCTCCTTGTCTCGCTC
TCACTGGCAAGTCACTCCTTTACTGCCTGCAGAGCCCACTTCTTAGAATT
CTGGGTACACTGAAGACCAGCTGAGACTTCTTGCATCATGGACTGAACTA
CTCATTCCTTGGTAGACAACCATTGTAGAACTAGATGGAGCACAGCCTGT
AAGCCATTGTAATATAACACACACACACACACACGTGTGTGTTTGTGTGT
GTGTGTGTGTGTGTGTGTGTATGTATGTGTTTATTGTACGTATATTTTAT
ATTATTTATCTTCTTTTATCTTTTAATTAGAAAATCTGTCTTTCATATTT
AGTAGTCCTAAGTTTTTTCTTTTTTTATCCTTTTTTAATTCGTCGGTTTT
TTCATTAGTCTACCTTTTATTATTTCTTTTTTTGTGCTTAGTTTCCATCT
GTTATTATACACTCTTGTACGCCTTTGTTATTTTTTATTTTCTTTTTTTA
ACCCAGACAATTATTTTTCTATTTTTTATATTCCTGTTTTGCCAATTACT
AATTTCGCACTTCAATCAATTTTTTTAATTGTGGTGTATTTCCTCTTTTC
CTTTGCTTTN
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXTCTCTCCATTCTTTAGGAATAATTGAATGAAACTGTAAAAAAAAATC
AGGTCATGTTCCCAATGCCTGTATTTTAGAGTCACCGATGCCATATTAGA
GCCCCAGCTGTTAGCACAGTGATTCACTGAAAAGCTGTAAAGTCTCTCGT
GAGATACTGGTGCTGACGATCTTCTTCTGCTCCTAATGAGTCGAGTGTAC
AGACCTGGAAATTGCAGTTGGAGTCCTCTTAAGAAAGACACATTCTTTCT
AAACATTAGGGAATTAATTGTCTGCAGTGCGTAGGACCCAAATGTGCACA
CTGAGGTTTGTCTATCCATTGCTGTAGATGTTCTGGGAAGACTTTTCTAT
GATGTCTACCCTTTATTCAGATTCCCAACTGACAGTTAACATGGTACTGT
GTGTGGGTTCTTTAGGCCTTCAGAATTTCACAGGCACTACCTTGGTCACC
TGGACACCTGGGCCTCCTGACAGGCAGCCAGTCAGGACAGGGCTAACCCA
AGCTAACTATTTATTTTATCTTATCTGGCGTTTCACAAGATAGGTGTTCC
TGGTAGCTCGTGAGAGCCAGTGTGATTTTCTAGAATTACTTAGCTTTACG
TAACAGGGAGCCCCAGCCTACCTGATGGGTAGCTTGCTCCTTTCAGTAAT
GCGCACTGTGACTCAAGGGTCTTCCCTGCTTCCGCATGCTTCACTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no499_c05.g1 MSMg01no499_c05.g1 CHROMAT_FILE:
MSMg01no499_c05.g1 PHD_FILE: MSMg01no499_c05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:27 2005
         (642 letters)



>mm_chr17_63785232_63786275
          Length = 1044

 Score = 1195 bits (618), Expect = 0.0
 Identities = 637/644 (98%), Gaps = 2/644 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttaggaataattgaatgaaactgt--aaaaaaaaatcaggtcatgttcccaatgcctg 58
           |||||||||||||| |||||||||||  |||||||||||| |||||||||||||||||||
Sbjct: 844 ctttaggaataatttaatgaaactgtaaaaaaaaaaatcaagtcatgttcccaatgcctg 785

                                                                       
Query: 59  tattttagagtcaccgatgccatattagagccccagctgttagcacagtgattcactgaa 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 tattttagagtcaccgatgccatattagagccccagctgttagcacagtgattcactgaa 725

                                                                       
Query: 119 aagctgtaaagtctctcgtgagatactggtgctgacgatcttcttctgctcctaatgagt 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 aagctgtaaagtctctcgtgagatactggtgctgacgatcttcttctgctcctaatgagt 665

                                                                       
Query: 179 cgagtgtacagacctggaaattgcagttggagtcctcttaagaaagacacattctttcta 238
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 cgagtatacagacctggaaattgcagttggagtcctcttaagaaagacacattctttcta 605

                                                                       
Query: 239 aacattagggaattaattgtctgcagtgcgtaggacccaaatgtgcacactgaggtttgt 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 aacattagggaattaattgtctgcagtgcgtaggacccaaatgtgcacactgaggtttgt 545

                                                                       
Query: 299 ctatccattgctgtagatgttctgggaagacttttctatgatgtctaccctttattcaga 358
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 544 ctatccattgctgtagatgttctgggaagacttttctatgatgtctatcctttattcaga 485

                                                                       
Query: 359 ttcccaactgacagttaacatggtactgtgtgtgggttctttaggccttcagaatttcac 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ttcccaactgacagttaacatggtactgtgtgtgggttctttaggccttcagaatttcac 425

                                                                       
Query: 419 aggcactaccttggtcacctggacacctgggcctcctgacaggcagccagtcaggacagg 478
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 424 aggcactaccttggtcacctgtacacctgggcctcctgacaggcagccagtcaggacagg 365

                                                                       
Query: 479 gctaacccaagctaactatttattttatcttatctggcgtttcacaagataggtgttcct 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 gctaacccaagctaactatttattttatcttatctggcgtttcacaagataggtgttcct 305

                                                                       
Query: 539 ggtagctcgtgagagccagtgtgattttctagaattacttagctttacgtaacagggagc 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ggtagctcgtgagagccagtgtgattttctagaattacttagctttacgtaacagggagc 245

                                                       
Query: 599 cccagcctacctgatgggtagcttgctcctttcagtaatgcgca 642
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 cccagcctacctgatgggtagcttgctcctttcagtaatgcgca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1044
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1034
Effective search space:   653488
Effective search space used:   653488
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)