Query= MSMg01no501_l23.b1 MSMg01no501_l23.b1 CHROMAT_FILE:
MSMg01no501_l23.b1 PHD_FILE: MSMg01no501_l23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:38 2005
(614 letters)
>mm_chr17_48740547_48741562
Length = 1016
Score = 1098 bits (568), Expect = 0.0
Identities = 601/614 (97%), Gaps = 6/614 (0%)
Strand = Plus / Plus
Query: 5 gaattccatcaaacatcc--gcaaagagggatgctgttgtcccaaatctctaagggtagc 62
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatcaaaca--caggcaaagagggatgctgttgtcccaaatctctaagggtagc 262
Query: 63 tgcggcatcagctggttctctcctgcaggaatcctgatgttcaggacagacctgtgtgga 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tgcggcatcagctggttctctcctgcaggaatcctgatgttcaggacagacctgtgtgga 322
Query: 123 gttgtcagtgagagagatgtgtgtaagtacttgagacagataaaatagttctaggaaaac 182
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 323 gttgtcagtgagagagatgtgtgtaagtacttgagacagataaaatagttctgggaaaac 382
Query: 183 agaagaacacaagagggtcaagct--tggctctgggtatcgcatgggtcaccagcaggct 240
|||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||
Sbjct: 383 agaagaacacaagagggtcaagcttgtggctctgggcattgcatgggtcaccagcaggct 442
Query: 241 tcccttcggctggggactttggtggggatcaaggctaacaggctgattcacttgattagt 300
|||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 443 tccctttggcaggggactttggtggggatcaaggctaacaggcagattcacttgattagt 502
Query: 301 ctacttggttagctaatgtttaaggctcagcttgctcaaggattcctagacagttctgcg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ctacttggttagctaatgtttaaggctcagcttgctcaaggattcctagacagttctgcg 562
Query: 361 ggattcacaccctagtggaaggtaagaagtagtaaggaggagagagccctgagggtacca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ggattcacaccctagtggaaggtaagaagtagtaaggaggagagagccctgagggtacca 622
Query: 421 ccatttaacggtgggcagggccagtgccagggaagccttgggcagatgcctggacactta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ccatttaacggtgggcagggccagtgccagggaagccttgggcagatgcctggacactta 682
Query: 481 gagagaagagggtaccataggtggactctccctggttgagctgagtaaatttctagcgta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gagagaagagggtaccataggtggactctccctggttgagctgagtaaatttctagcgta 742
Query: 541 tacaaagccttggttcaatcccacacacaatgaacaataacaacattcaaaagaatggcc 600
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 743 tacaaagccttggttcaatcccacacacaatgaacaataacaacagtcaaaagaatggcc 802
Query: 601 cgagggctggagag 614
||||||||||||||
Sbjct: 803 cgagggctggagag 816
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1016
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1006
Effective search space: 607624
Effective search space used: 607624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_l23.g1 MSMg01no501_l23.g1 CHROMAT_FILE:
MSMg01no501_l23.g1 PHD_FILE: MSMg01no501_l23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:38 2005
(405 letters)
>mm_chr17_48918343_48919146
Length = 804
Score = 625 bits (323), Expect = 0.0
Identities = 355/367 (96%), Gaps = 2/367 (0%)
Strand = Plus / Minus
Query: 36 gatgtccaagacaagctcttcgttccaacatcacttgtaaacatgttcctaatgactaga 95
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gatgtccaagacaagctcttcgttccaacatcacttgtaaacatgttcctaatgactaga 745
Query: 96 gccc-gtgggagctgccagtaagctaggtatttctaagcccatgtttttcagatggagaa 154
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gccctgtgggagctgccagtaagctaggtatttctaagcccatgtttttcagatggagaa 685
Query: 155 actgagcttccaagagattaaataacttgcctacagtcacaaaactattaaataagggaa 214
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 684 actgagcttccaagagattaaataacttgcctaaagtcacaaaactattaagtaagggaa 625
Query: 215 gatgtattagatctctggacttctcatgctaaactctatggtagtatattagtaagggtt 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gatgtattagatctctggacttctcatgctaaactctatggtagtatattagtaagggtt 565
Query: 275 tccccagagccaggtgtagatctgtgggataggtggatagagatgatgtagatgatgcag 334
||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 564 tccccagagccgggtgtagatctgtgggatagatggatagagatgatatagatgatgcag 505
Query: 335 aggatatatnggatgtagatgtagataaagtnaatgtnaaagaaatagatgaantangta 394
||||||||| ||||||||||||||||||||| ||||| |||||||||||||| || |||
Sbjct: 504 aggatatat-ggatgtagatgtagataaagtcaatgtcaaagaaatagatgacctaggta 446
Query: 395 taaatga 401
|||||||
Sbjct: 445 taaatga 439
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 804
Length adjustment: 9
Effective length of query: 396
Effective length of database: 795
Effective search space: 314820
Effective search space used: 314820
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
