Query= MSMg01no501_p22.b1 MSMg01no501_p22.b1 CHROMAT_FILE:
MSMg01no501_p22.b1 PHD_FILE: MSMg01no501_p22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:55 2005
(333 letters)
>mm_chr17_50655643_50656381
Length = 739
Score = 598 bits (309), Expect = e-175
Identities = 329/339 (97%), Gaps = 6/339 (1%)
Strand = Plus / Minus
Query: 1 agtaatttaacacctcaaaaaagaaacaaaagctgaacaaaaactatgtaagtcacttat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 agtaatttaacacctcaaaaaagaaacaaaagctgaacaaaaactatgtaagtcacttat 480
Query: 61 aaaaacccaaacaccagagaagagagtgaatgctttaatgagcaatagcactctccagct 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 479 aaaaacccaaacaccagagaagagagtgaatgctttaatgaacaatagcactctccagct 420
Query: 121 atgctttttaaactctgagaccagagtttatgaaagtgcaaaggtttatgtttaattcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 atgctttttaaactctgagaccagagtttatgaaagtgcaaaggtttatgtttaattcag 360
Query: 181 gaacacaaaag------atcatttgacctcatgcagagcaattctggaaggaatgaagtc 234
| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ggacacaaaagggacagatcatttgacctcatgcagagcaattctggaaggaatgaagtc 300
Query: 235 cccaagcccaactttatatgaacgcattttcttctgattatgttcaaaactaagtgcgtg 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 cccaagcccaactttatatgaacgcattttcttctgattatgttcaaaactaagtgcgtg 240
Query: 295 agaaaaaaggttattattgaagtacaaagcctattccaa 333
|||||||| |||||||||||||||||||||| |||||||
Sbjct: 239 agaaaaaaagttattattgaagtacaaagcccattccaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 739
Length adjustment: 9
Effective length of query: 324
Effective length of database: 730
Effective search space: 236520
Effective search space used: 236520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_p22.g1 MSMg01no501_p22.g1 CHROMAT_FILE:
MSMg01no501_p22.g1 PHD_FILE: MSMg01no501_p22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:55 2005
(566 letters)
>mm_chr17_50493082_50494047
Length = 966
Score = 803 bits (415), Expect = 0.0
Identities = 504/567 (88%), Gaps = 59/567 (10%)
Strand = Plus / Plus
Query: 1 cccagcaacaacatggtggctcacaaccatctatactgggatctgatgccctcttctggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 cccagcaacaacatggtggctcacaaccatctatactgggatctgatgccctcttctggc 317
Query: 61 atgcaggtgtacatgcaaatagatcactcatacattaaggaaagaaagaaagaaagaaag 120
|||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 318 atgcaggtgtacatgcaaatagatcactcatacattaaggaaag-------g-aagaaag 369
Query: 121 aaagaaagaaagaaagaaagaaagaaagaaagagagagagagagagagagagagagagag 180
|||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 370 aaagaaagaaagaaagaaagaaagaaagaa----------------agagagagagagag 413
Query: 181 agagagagagagagaaagaaagaaagaaagaaagaaaggaaggaaggaaaagaaggaaaa 240
|||||||||||||||||||||| | |||| ||||||||||||||||
Sbjct: 414 agagagagagagagaaagaaag-------g-aaga----aaggaaggaaaagaag----- 456
Query: 241 aaggaaggaaaagtatgaaggaagaaggaaaggaatatcttttttagcaccaggcatggt 300
||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 457 ----------------gaaggaagaaggaaaggaatatcttttctagcaccaggcatggt 500
Query: 301 tgttgcatacctttaatcccagcactggggaggtagaggtatacaggcagatgtttgtga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgttgcatacctttaatcccagcactggggaggtagaggtatacaggcagatgtttgtga 560
Query: 361 gttggaggccagcctagtctgcaaattattccatagaggaactccgtcttgaaaaacatc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttggaggccagcctagtctgcaaattattccatagaggaactccgtcttgaaaaacatc 620
Query: 421 ctcccaatctttagaatttcatagattgttgttcaatccatgat-gggccccttgggccg 479
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 621 ctcccaatctttagaatttcatagattgttgttcaatccatg-tcgggccccttgggccg 679
Query: 480 tacctgatggtttatgctaatggcatgactcacggtgctttccttatataaatggaatga 539
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 680 tacctgatggtttatgctaatgacatgactcacggtgctttccttatataaatggaatga 739
Query: 540 ctcaagtttgatctggctgatgccaga 566
|||||||||| ||||||| ||||||||
Sbjct: 740 ctcaagtttggtctggctaatgccaga 766
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 79
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space: 531536
Effective search space used: 531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
