BAC Information

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BAC

Clone NameMSMg01-502P22
Chromosome17 (Build37)
Map Location 82,127,364 - 82,127,760
singlet/doubletsinglet
Overlap geneSlc8a1
Upstream geneMap4k3, LOC100043697, C230072F16Rik, LOC675572, EG668830, Tmem178, Thumpd2, LOC100043700, LOC100043704
Downstream geneEG668832, LOC100043707, LOC625467, LOC668836, EG433141, EG625514
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502P22.T7 (MSMg01no502_p22.b1)MSMg01-502P22.TJ (MSMg01no502_p22.g1)
ACCAG578216AG578217
length808753
length of high quality
(start - end)		404 (61 - 464)248 (76 - 323)
definitionCHROMAT_FILE: MSMg01no502_p22.b1 PHD_FILE: MSMg01no502_p22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:09 2005CHROMAT_FILE: MSMg01no502_p22.g1 PHD_FILE: MSMg01no502_p22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAATTCTTTGGG
TTTCTCACAGTGAATTTGCCTTAATATTACCTGCCTCAGCAGTCTTCGCT
GTGAGTCAGTGTTTTTCAAAGTCATTTTTGTAAACTTTTATTTTTTTAAG
ACTTACATAAAATTTCACATGAAAAAGTGGGTGGGTAAGAAACATGATTT
TAAGGTCTGAAAAGAAACTTCCATGGAGTTTTGGAGATTTCCAAACTATA
ACTTTTTAAAAGAATTAACTGACGGATAAGCATTGTAAATTTTATATTCA
AAGTGCAGATTGTGAGTATAATTTGATGAATTGAGGCATGTATGTATACA
GATAAATAAGACAGATGATAGATAAATACATGGTAGATAGATAGATAGAT
AGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAG
ATAGATAGAGACTGATAGACAGAGAGACCGATAGACAGAGAGACATTTAC
AAATGATACACTTTCAACTTCTTCCATTTTATATTTTAACCAAAATGCAC
ATGCGCGATTTTTAACCTTCCTATGAACCCCACAATTATGTTGTCTACCG
GAAATAGTCTTGCCCTAGTGTGTAATACTCCATTCCTATTAACTCCCTTT
TATACCTGTGGCCGGAATACTCAACTGCTCTTAGTTATCCCCTTAATCTC
CCCCTTCCACTGTTTGTTTTACCTTCACATTCATTCCCCCTGTTTTCATT
CTTCTTTCATCCCTCGCGGTTAACTATCGTCATACTCCCCGCATATTCCG
TTTCCCAG

CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTTTTCCCTACTAATATCCATAGT
GCACATGAATATGGAATATCGTCACATGCTTATGATGGCGTTTTCTTTTT
TTTTTTCTTTTTTAATGATTTGTATAGTTGGGTCTGTTCATAGAATGAAG
TATCTGCAGAAGCTGGAGGAAGGCATTGCATGCCCTGCAGCTGGAGTGAC
AGGTGGTTGTGAGCTACACAAGTTTAGTCCTAGGAACTTAACTCTGGTTA
TCTGCAGAAGCAGTATGGATTCTTGATTACTGCACTATTTCTCTAGCCCA
GGTGAAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTNN
NNNNNNNNNNTNTNNNTCTCCCCCTTCTTTTTTTTCTTTCCTCCCTTTCT
TCTTTTTTTTCTCTTTTTTTTCCTTCCTCTCTCTCTTCTTTTTCTTTCTC
TTTCCCTTCTTTCTTTCCTCTTTTCCTTTCTTTTTTTTTCTCCTTTCCCT
CTTTTCTCCTTTCTCTCTTTCCTCCCTCCTCCTCTTTCCTTCCCCCTTTT
TTTTTTTTCTTTCTTCTCTCCTTTTCTTTTTCTCCCCTCTCCTTCCCTTG
TTCCTTTTTCCCCCCTCCTCTTTTCCTTTTTTTTCCCTTTTTCCTTTTTC
TTTTTTCTTTTTCCTCCTTTTCCTTTTCTTTCCTTTCCTTTCCCTCTTTC
CTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_p22.b1 MSMg01no502_p22.b1 CHROMAT_FILE:
MSMg01no502_p22.b1 PHD_FILE: MSMg01no502_p22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:09 2005
         (404 letters)



>mm_chr17_82127255_82128058
          Length = 804

 Score =  648 bits (335), Expect = 0.0
 Identities = 380/397 (95%), Gaps = 4/397 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaatttgccttaatattacctgcctcagcagtcttcgctgtgagtcagtgtttttcaaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 506 tgaatttgccttaatattacctgcctcagcagtcttcgctgtgagtcagtgtttctcaaa 447

                                                                       
Query: 61  gtcatttttgtaaacttttatttttttaagacttacataaaatttcacatgaaaaagtgg 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 446 gtcatttttgtaaacttttatttttttaagacttacatgaaatttcacatgaaaaagtgg 387

                                                                       
Query: 121 gtgggtaagaaacatgattttaaggtctgaaaagaaacttccatggagttttggagattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gtgggtaagaaacatgattttaaggtctgaaaagaaacttccatggagttttggagattt 327

                                                                       
Query: 181 ccaaactataactttttaaaagaattaactgacggataagcattgtaaattttatattca 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 326 ccaaactataactttttaaaagaattaactgacgggtaagcattgtaaattttatattca 267

                                                                       
Query: 241 aagtgcagattgtgagtataatttgatgaattgaggcatgtatgtatacagataaataag 300
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 266 aagtgcagattgtgagtataatttgttgaattgaggcatgtatgtatacagataaataag 207

                                                                       
Query: 301 ac----agatgatagataaatacatggtagatagatagatagatagatagatagatagat 356
           ||    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 acagatagatgataggtaaatacatggtagatagatagatagatagatagatagatagat 147

                                                
Query: 357 agatagatagatagatagatagatagatagatagata 393
           ||| | ||||| | ||||| | ||||| | |||||||
Sbjct: 146 agagacatagagacatagagacatagagacatagata 110


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space:   314025
Effective search space used:   314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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