Query= MSMg01no504_a09.b1 MSMg01no504_a09.b1 CHROMAT_FILE:
MSMg01no504_a09.b1 PHD_FILE: MSMg01no504_a09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:29 2005
(589 letters)
>mm_chr17_71053820_71054807
Length = 988
Score = 1023 bits (529), Expect = 0.0
Identities = 574/589 (97%), Gaps = 1/589 (0%)
Strand = Plus / Plus
Query: 1 aatgggtgctctgtcagctgtgtagaacacttgggaggcagagacaggcagatctctatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgggtgctctgtcagctgtgtagaacacttgggaggcagagacaggcagatctctatg 260
Query: 61 agttcaaggacagcctggtctacagagtgagttccaggacctccagagctacagagtaag 120
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 agttcaaggacagcctggtctacagagtgagttccaggacagccagagctacagagtaag 320
Query: 121 accctgtcaaacaaaacaaaaaccaaaaagaaaagaaaaacacaaaggtaagtggacatt 180
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 321 accctgtcaaacaaaacaaaaaccaaaaagaaaagaaaaacacaaagataagtgaacatt 380
Query: 181 taggaaaatgaaggagagatggtaatttgtaacaactgttcggtgtatagctttctctct 240
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 taggataatgaaggagagatggtaatttgtaacaactgttcaatgtatagctttctctct 440
Query: 241 acagataatggtccatctttattagttaattctaggttttcaaagaataagctatttgga 300
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcagataatggtccatctttcctagttaattctaggttttcaaagaataagctatttgga 500
Query: 301 gaggctctgcttttaggcagatgggggattcaagaaaaaaaattctgtagtcagatgtct 360
||||||||||||||||||||||||||||||||||||||||| |||| | |||| ||||||
Sbjct: 501 gaggctctgcttttaggcagatgggggattcaagaaaaaaa-ttctatggtcaaatgtct 559
Query: 361 ccagttctcgtttatgcttatgcaatattatcacatgtcctgtgcttgctccttcaaagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ccagttctcgtttatgcttatgcaatattatcacatgtcctgtgcttgctccttcaaagg 619
Query: 421 agccagtgatagatcctttatctgtgttcttagtggcccagctatggcctgagatggagc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 agccagtgatagatcctttatctgtgttcttagtggcccagctatggcctgagatggagc 679
Query: 481 tgtgacctggagagggggaagagcagagcctcccaggcccagcacacactcaaaatgtag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tgtgacctggagagggggaagagcagagcctcccaggcccagcacacactcaaaatgtag 739
Query: 541 taatctgtaccagtgaaggacttccttgaccggcctcaaggatggcact 589
|||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 740 taatctgtaccagtgaaggacttccttgactggcctcaaggatggcact 788
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 988
Length adjustment: 10
Effective length of query: 579
Effective length of database: 978
Effective search space: 566262
Effective search space used: 566262
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no504_a09.g1 MSMg01no504_a09.g1 CHROMAT_FILE:
MSMg01no504_a09.g1 PHD_FILE: MSMg01no504_a09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:29 2005
(404 letters)
>mm_chr17_71212510_71213313
Length = 804
Score = 731 bits (378), Expect = 0.0
Identities = 398/405 (98%), Gaps = 2/405 (0%)
Strand = Plus / Minus
Query: 1 ttaccttaggagggctgtgaagcccgggccagccagaggaagaacttgtatcccaggaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 ttaccttaggagggctgtgaagcccgggccagccagaggaagaacttgtatcccaggaac 545
Query: 61 aagtttcacagttggactggccaccttgtaagacagactagagccaagacaacaatggac 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 aagtttcacaattggactggccaccttgtaagacagactagagccaagacaacaatggac 485
Query: 121 caaatggcaggggacataccctgagcagggatcctcctgccctgttttagcctaaactgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 caaatggcaggggacataccctgagcagggatcctcctgccctgttttagcctaaactgc 425
Query: 181 acagtaacaatccaaagatgaactgagcatccttgcttgctccctt-cccagtgtggcca 239
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 424 acagtaacaatccaaagatgaactgagcatccttgcttgctcccttccccagtgtggcca 365
Query: 240 ctgaatttatatcctttctctggtttcagtttcttctcttcccttgtgtgacagnggaca 299
|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 364 ctgaataaatatcctttctctggtttcagtttcttctcttcccttgtgtgacagtggaca 305
Query: 300 gctgaccacgcctagcttgctgaggcttcgacccttaaaattcttttttttttttttttg 359
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gctgaccacgcctagcttgttgaggcttcgacccttaaaattcttttttttttttttttg 245
Query: 360 gcaattgtccttttttaaagatttatttattttatcttatgtgag 404
||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 244 gcaattgtccttttttaaagatttattta-tttatcttatgtgag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space: 314025
Effective search space used: 314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
