BAC Information

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BAC

Clone NameMSMg01-504D06
Chromosome17 (Build37)
Map Location 41,500,962 - 41,501,269
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668229, LOC100043756, EG433107, EG619517, Crisp2, Rhag, 9130008F23Rik, EG435528, Cenpq, Mut, Ldha-ps3, LOC627577
Downstream geneLOC627626
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-504D06.T7 (MSMg01no504_d06.b1)MSMg01-504D06.TJ (MSMg01no504_d06.g1)
ACCAG579139AG579140
length667796
length of high quality
(start - end)
48 (61 - 108)308 (74 - 381)
definitionCHROMAT_FILE: MSMg01no504_d06.b1 PHD_FILE: MSMg01no504_d06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:44 2005CHROMAT_FILE: MSMg01no504_d06.g1 PHD_FILE: MSMg01no504_d06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCAACCATAATTGGGCGCTAAACGACTCCTTCGGGAGAGATCCGCGGAT
TCCCTTTGAATTCCCACACTTAAATAGTACACCCTGGTGACATTTGTCCT
GCTATTGTACCTTNTTCCTNNNTTNNNNNNNCCCCCCCCCCCCCCATTTT
TTTTTTTTTTAAAAAGGGGAGGCCCCCCCCACGGGCCTGTTATTTTGGGG
GGGTTTGCTGGTTCTCAGAGCGGGGGAAGCGGGGGCTCTATTATCGTTTT
GTGGGGGGGGGGGGGGGTTAGAATAATATATGTATTGTGTGCGCGCCATG
CCACTGTGTTGTTTCTGGGCGCGCGCGAGAGGAAAAAAGAGGGGGGCTCT
TAATTCGCTTGATTTTGGGGGGGCGGGGGGGGGCGCGTTTTTGGGGTGAT
ATCTGTTGGCACGGCGGCTCTGATATGGAGGGCTATAGTGGGAGGGCGGG
TTAGCGCTCGTGAACGGAGATTTGTAGGGATAATTTTGTTGACTGGAGAG
ACGTTGTGAGGGGCGTATATGGCGTAGGTCTCCTGCGTTTCGGTTTTGGG
GTTTTAGCCCTGTGGCGCGGTGGATGCGGCATATGGTGGGCCGAGATGTA
CCCTGATGGGCTTACATTTGGTCCCCGCTTTGGGGGGCGGTCTGGGGTCT
TCTTTGTGTTCACCTCT
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATAGAATGTAGTTTTGCAATAATCTAA
ATTCCTACACACAGTTTCAAAGCACATACTCAGGTAAATATTTTAAAGAA
CTTAAGCTTTCAAGTAATTTACCTATTGATGCATAAATGACTTAAATGGT
TTAATATAAAAAAATAATNAGCTTCCAGTAGGCTCCAGCACTGGGTCACC
TTGGGCAGGGAGTTGGTAGACACCCCCAAGGTCTCTAGAGGATGCTCCAC
ACAATCTTAGGACTACTGGTGAGTGGAACACAACTTCTGTTTCAATCCAA
TCATGCGGGGAGCTGAGACAGCATTAAAAAAGCAGAAAACCAGGCCTGAA
CCAGGTCACAAGTCACTTCCAGTCGGTGCCAGCACCCGGGTCACCTTTGG
GCGCAGAGTTGTGCGGACACCCACAAGGTCCCCTAGAAGGACTCTTCACC
ACAATCTTAGGGACACTTGAACAAAACAAGCTCCACACTTCCTTCAAAGG
AAAAAATCTTTTTCCCAGGCACCTGGAACACCTCCCCAGGGAATCTTTTG
AACAACAGGGATTCCCCCCGAAATAAAAGGAACCTTTGTTCCCCACCCCA
GTATTTTTCAGGGGTCCCCCAAAGGAATCTTTGACTTGGCCAGAAAAATC
TTGAAACACACCCCCAAATACTCCCGGGGTCCCCAGGGGACCCCCCCCAT
GCTAAGGGATTCCTCCAAAGAAAAAGCTGTGGAGCCCTCTAGGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no504_d06.g1 MSMg01no504_d06.g1 CHROMAT_FILE:
MSMg01no504_d06.g1 PHD_FILE: MSMg01no504_d06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:44 2005
         (308 letters)



>mm_chr17_41500762_41501469
          Length = 708

 Score =  559 bits (289), Expect = e-164
 Identities = 304/309 (98%), Gaps = 2/309 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atagaatgtagttttgcaataatctaaattcctacacacagtttcaaagcacatactcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atagaatgtagttttgcaataatctaaattcctacacacagtttcaaagcacatactcag 260

                                                                       
Query: 61  gtaaatattttaaagaacttaagctttcaagtaatttacctattgatgcataaatgactt 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaaatattttaaagaacttaggctttcaagtaatttacctattgatgcataaatgactt 320

                                                                       
Query: 121 aaatggtttaatataaaaaaataatnagc-ttccagtaggctccagcactgggtcacctt 179
           ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 321 aaatggtttaatataaaaaaataat-agccttccagtaggctccagcactgggtcacctt 379

                                                                       
Query: 180 gggcagggagttggtagacacccccaaggtctctagaggatgctccacacaatcttagga 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gggcagggagttggtagacacccccaaggtctctagaggatgctccacacaatcttagga 439

                                                                       
Query: 240 ctactggtgagtggaacacaacttctgtttcaatccaatcatgcggggagctgagacagc 299
           |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 440 ctactggtgagtggaacacaacttctgtttcaatccaatcattcagggagctgagacagc 499

                    
Query: 300 attaaaaaa 308
           |||||||||
Sbjct: 500 attaaaaaa 508


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 708
Length adjustment: 9
Effective length of query: 299
Effective length of database: 699
Effective search space:   209001
Effective search space used:   209001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)