Query= MSMg01no505_g12.b1 MSMg01no505_g12.b1 CHROMAT_FILE:
MSMg01no505_g12.b1 PHD_FILE: MSMg01no505_g12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:18 2005
(575 letters)
>mm_chr17_48068107_48069083
Length = 977
Score = 994 bits (514), Expect = 0.0
Identities = 560/582 (96%), Gaps = 14/582 (2%)
Strand = Plus / Minus
Query: 2 actaagcaagtggtcgactaccacggatccatgcatgggcggatttgttttttaaatgag 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 actaagcaagtggtcgactaccacggatccatgcatgggcggatttgttttttaaatgag 718
Query: 62 atatttatacatcggatcctacctgttatgctaaagagggttaactccccaaatgtatgg 121
||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct: 717 atatttatacatcggatcctacctgttatgctagagaggattaactccccaaatttatgg 658
Query: 122 actcctccctatggagtagttggctctgatacttggaaggaaccctcagagaaaggaaaa 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 657 actcctccctatggagtagttggctctgatacttggaaggaaccctcagagaaagaaaaa 598
Query: 182 gcaggcattggtttgtgggaagctaaagggtgcagtggtcagggtgagacataacaagac 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 gcaggcattggtttgtgggaagctaaagggtgcagtggtcagggtgagacataacaagac 538
Query: 242 ttta------tctttatcatgccctaggtgatgatgaggtggtgtgcagaacacctagca 295
| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 ---agcaacccc---atcatgccctaggtgatgatgaggtggtgtgcagaacacctagca 484
Query: 296 ctcagcctagggtaccagtctgctccactagcatccgcctcacccaagccttcagctgct 355
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 483 ctcagcctagggtaccagtctgctccactagcatccacctcacccaagccttcagctgct 424
Query: 356 cactctgtgaatctccagctacctggcaacagagagaatcttggggtgagaaggccagag 415
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 423 cactctgtgaatctccagctacctggcaacagagagaatcttggggtgagaaggccagcg 364
Query: 416 gtcaaacgtagatgaacctggagaagaacggatcctaagtgataagggagagaccagaaa 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gtcaaacgtagatgaacctggagaagaacggatcctaagtgataagggagagaccagaaa 304
Query: 476 ga--agggaatcaatgaaccgggaagggaatcctggggttccggcctggcatagaatatg 533
|| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 303 gaagagggaatcaatgaaccgggaagggaatcctggggttccggcctggcctagaatatg 244
Query: 534 gctcagtggagtgtacagaaacctaagaagcaggtcagctca 575
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gctcagtggagtgtacagaaacctaagaagcaggtcagctca 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 977
Length adjustment: 10
Effective length of query: 565
Effective length of database: 967
Effective search space: 546355
Effective search space used: 546355
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no505_g12.g1 MSMg01no505_g12.g1 CHROMAT_FILE:
MSMg01no505_g12.g1 PHD_FILE: MSMg01no505_g12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:18 2005
(283 letters)
>mm_chr17_48011198_48011881
Length = 684
Score = 511 bits (264), Expect = e-149
Identities = 279/284 (98%), Gaps = 1/284 (0%)
Strand = Plus / Plus
Query: 1 tacaaaatagcaagttaggaacactggagttgctgctgaggggaccggggtgaggaccat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 201 tacaaaatagcaagttaggaacactggagttgctgctgaggggaccggggtgagggctat 260
Query: 61 tggtggacctggtgggctatttctgcagaactgttgaggggacaaagtagtaggtagcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggtggacctggtgggctatttctgcagaactgttgaggggacaaagtagtaggtagcct 320
Query: 121 tggtctcagtagactgtggcggtttagagaagaaagtc-ggatgagggagatagggcagg 179
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 tggtctcagtagactgtggcggtttagagaagaaagtcaggatgagggagatagggcagg 380
Query: 180 tcttaccttccaggtggctgtgtttcttcggaagtaggcaaacatcctggtgaaccagtt 239
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 tcttaccttccaggtggccgtgtttcttcggaagtaggcgaacatcctggtgaaccagtt 440
Query: 240 ataaatctcatttagcgtcagctgccgatctggagtttccagaa 283
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataaatctcatttagcgtcagctgccgatctggagtttccagaa 484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 684
Length adjustment: 9
Effective length of query: 274
Effective length of database: 675
Effective search space: 184950
Effective search space used: 184950
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
