BAC Information

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BAC

Clone NameMSMg01-505N06
Chromosome17 (Build37)
Map Location 21,849,681 - 21,850,366
singlet/doubletsinglet
Overlap geneZfp760
Upstream geneV1re6, LOC100041976, V1re3, V1re1, V1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508, Zfp52, BC049807
Downstream geneBC043476, 4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010, EG665844, EG210853, LOC671007, EG240038, EG631624, 6330416L07Rik, Zfp758, 1300003B13Rik, EG210876, LOC100042656, EG628185, ENSMUSG00000046088
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-505N06.T7 (MSMg01no505_n06.b1)MSMg01-505N06.TJ (MSMg01no505_n06.g1)
ACCAG580370AG580371
length762750
length of high quality
(start - end)
686 (73 - 758)562 (70 - 631)
definitionCHROMAT_FILE: MSMg01no505_n06.b1 PHD_FILE: MSMg01no505_n06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:49 2005CHROMAT_FILE: MSMg01no505_n06.g1 PHD_FILE: MSMg01no505_n06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACGGATTACTGAGGACAACTTGAAGAAATATCATGTTAGGG
TGAGTGTAAGGTCATGAAAACTATTCACACTGAAGTGCAGTAACAAAGAC
ACCTTGAAAAGCTTGACAGCAAGAAGCTCTGGTTTTAAAGGACATATGTA
CATAATTATGTACCTGAGGGCTTATAAACATAGGAATAGGTCAATTCCTA
ATAATATATAGAAAGATATTAGAAATTAATGTAATAGAGATACACTGAAC
AATACCAGGAGTCAATGTAACAGACTTGTTTCTGTCAAGAAATAAAAAAA
AATTCTGACAAAGTATGCTTTAACCTAATCCCAACTAAGAGAGTAAATCC
CTAAGCAATGGAATTAGAGCTGAAAGAGGGTATAACAATGGACACCCTGT
ATTATTTTATGGAGTGCTGATGAAAGTCATTCCAAATAAACTTGACATGT
AGAAGAAAAGGATAGTTCCTAAAAACAATTTTCTGTTATAAAACTAGAGT
AGATCTTATACAAATACTGGGACTTAAGCACTAATAATTTCTTCTAAAAC
TACCCCAGCACTAGACAGATTCAACACTGCATTCTCTAAAGGAATAACAT
ATCATACAAAGCTGCTTTAGACCTTGATACCCAAAGCAGATAAGGACAAG
CAAATACATGCAAAGAGCAATAGTCAAGGTAGAAATCGATACAGAGACCC
TCTCTGAACTAN
TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGGAATGTAGAAAGGAAGTTACCTATTCAGT
TACTAATTAAGCATTACAAATACAGTAGCTCAGAGCTGGTCTGCAAAATA
TTTACCAAGGACAGTAGCAATTCTCACCCAAACAAGGGAATAATAGAGCG
AGGCTTTCCCACTGAGACAGAGATCTTCTCTACAGCTAGGTATAGGGAGC
TTCACTTTAGAAGCAAGTTGGTATATTCTTCTGTAGACCCAGGAAATAAG
GTGTTGGGGTATTGCACTATTCATGATAAGGTCTGCTAGTGCAGAATCCC
TGGTGGTGGGTTTAACAATAGACTAGTTTACACCTGGCTCCCTTCTTTTG
CGGCAGCAGCCTGGTCCCCACCTTCTTTTGATGTATACATTCCTTTTGTA
TTGCATCACTGTAACTTGGTGGATTGTATTTTGCCTGGTTTCTTGTTATT
TCTTTGGTATACAAAGTTTGATGCTCGACCTGACACATTACATTCAGATT
CTACACAATCTCGCATGTTGATCTGTCTGTCAACCACTGACGATTTGCCC
ACCTGCCCCAGAGACCTGTTCTACGCAGACAAAGGGACCCAGAGGGTCTG
CGGCAGTGTGAGGTGGAATCTCGGGGTTGTTTTGATTTATATTTCCCTGA
TGATTAAGGATGTTAACCATTTTTTTAGGTGCTTCACAGTCATTTAGTAT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no505_n06.b1 MSMg01no505_n06.b1 CHROMAT_FILE:
MSMg01no505_n06.b1 PHD_FILE: MSMg01no505_n06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:49 2005
         (686 letters)



>mm_chr17_21849481_21850566
          Length = 1086

 Score = 1311 bits (678), Expect = 0.0
 Identities = 684/686 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gacaacttgaagaaatatcatgttagggtgagtgtaaggtcatgaaaactattcacactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 gacaacttgaagaaatatcatgttagggtgagtgtaaggtcatgaaaactattcacactg 827

                                                                       
Query: 61  aagtgcagtaacaaagacaccttgaaaagcttgacagcaagaagctctggttttaaagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 aagtgcagtaacaaagacaccttgaaaagcttgacagcaagaagctctggttttaaagga 767

                                                                       
Query: 121 catatgtacataattatgtacctgagggcttataaacataggaataggtcaattcctaat 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 766 catatgtacataattatgtacctgagggcttataaacataggaataagtcaattcctaat 707

                                                                       
Query: 181 aatatatagaaagatattagaaattaatgtaatagagatacactgaacaataccaggagt 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 aatatatagaaatatattagaaattaatgtaatagagatacactgaacaataccaggagt 647

                                                                       
Query: 241 caatgtaacagacttgtttctgtcaagaaataaaaaaaaattctgacaaagtatgcttta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 caatgtaacagacttgtttctgtcaagaaataaaaaaaaattctgacaaagtatgcttta 587

                                                                       
Query: 301 acctaatcccaactaagagagtaaatccctaagcaatggaattagagctgaaagagggta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 acctaatcccaactaagagagtaaatccctaagcaatggaattagagctgaaagagggta 527

                                                                       
Query: 361 taacaatggacaccctgtattattttatggagtgctgatgaaagtcattccaaataaact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 taacaatggacaccctgtattattttatggagtgctgatgaaagtcattccaaataaact 467

                                                                       
Query: 421 tgacatgtagaagaaaaggatagttcctaaaaacaattttctgttataaaactagagtag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tgacatgtagaagaaaaggatagttcctaaaaacaattttctgttataaaactagagtag 407

                                                                       
Query: 481 atcttatacaaatactgggacttaagcactaataatttcttctaaaactaccccagcact 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 atcttatacaaatactgggacttaagcactaataatttcttctaaaactaccccagcact 347

                                                                       
Query: 541 agacagattcaacactgcattctctaaaggaataacatatcatacaaagctgctttagac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 agacagattcaacactgcattctctaaaggaataacatatcatacaaagctgctttagac 287

                                                                       
Query: 601 cttgatacccaaagcagataaggacaagcaaatacatgcaaagagcaatagtcaaggtag 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 cttgatacccaaagcagataaggacaagcaaatacatgcaaagagcaatagtcaaggtag 227

                                     
Query: 661 aaatcgatacagagaccctctctgaa 686
           ||||||||||||||||||||||||||
Sbjct: 226 aaatcgatacagagaccctctctgaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space:   727376
Effective search space used:   727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)