BAC Information

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BAC

Clone NameMSMg01-507K21
Chromosome17 (Build37)
Map Location 35,085,158 - 35,085,485
singlet/doubletsinglet
Overlap genenone
Upstream geneWdr46, B3galt4, Rps18, Vps52, EG630499, LOC100042989, AA388235, H2-K1, LOC654352, Ring1, H2-Ke6, Slc39a7, Rxrb, Col11a2, LOC672505, H2-Pa, H2-Oa, Brd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2, H2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142, EG632126, Btnl5, LOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1, Tnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2, Slc44a4, Neu1
Downstream gene1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-507K21.T7 (MSMg01no507_k21.b1)MSMg01-507K21.TJ (MSMg01no507_k21.g1)
ACCAG581771AG581772
length758771
length of high quality
(start - end)
685 (50 - 734)529 (79 - 607)
definitionCHROMAT_FILE: MSMg01no507_k21.b1 PHD_FILE: MSMg01no507_k21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:18 2005CHROMAT_FILE: MSMg01no507_k21.g1 PHD_FILE: MSMg01no507_k21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAACCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAATCCG
CGGAATTCCTATATCCTTCCCCCCTAATAGCAATCTCTTATATAACCTCT
CAACCACGCCCCATCAGCCCAGTCCACGTAACAGCAGTCCATTGGCCAGA
ATCATCACTTGTCATATGGTCTGATCTTGCATCATGGTGCACCTGCGCAG
TTCACCCAGTGGACGTGGCTTAGTTTCAGGTGTATAAGGAAGTCAGGTGC
AAGTCATAAGACTTGGCTGCAGTCCCGGGTGCCATCTTGGGACTGTTGCC
ACACCCGCTCCTCACATCTCCCCTTCTTTACTTATTGGCAGAGAGAATGC
CTGTCTTAGGTTGCCCCCTGCGGCAGTGCCCCTTACCCATCCTTGGGAGA
CAAACAGCATTGGTTTGTTCCCTGTCTTAGGTTGATGACACACCCAGGGA
GTCTTACCCCTCATTGACTACTTCTCTAGCATGCCAAGCCACACTTGAGG
AGATTGTCCTGTTTCCACTGCCGCAAAAGCCTGTATTATCAAGGCTTGGG
CTCTGCGCTGGTGACTTTGCATGCGTCAGATGCACCAGAAGGCCAGGATG
CTGATTAATATCAGACACAGGGCAAGTTCACCAATTCTGGCCCACTCTTT
CAAGCGGGAGACGGCTGTTAGCAATCCAAAGCTTCTGCAACACCCGCAGA
TAAATTATTCACAGCCGCGGCAGTTTGTAAGGGATGTAGCCGCAGCTGTG
GCTACAGT
NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACAGACGCTGTGGTTGGTAGCA
CAAGAATTAGTTGTCCTGGCCTGGAGTGAGAGCGCTCAGGAGACTATTCT
TCCCTGAAGGACTGCTGGCAATTCATGGTCGCTGGGGACACCACGCTGAC
ATCGTCTTTTTTAAAAATTTTAAATAAGTTTCGATTTTATGTGTATGGGT
GTTTTGCTGCCATGTTTGTCTGGGCACCAGGCATGCACATGGTACACATG
TAGGCAAAATGCTCAAATGCTCATAAGAATAAAATAAATAAATTGTTAAG
TTTTAGGCTGGATTACTTAAATGCAGGTGATTACAGACAAACAACTTAAA
ATCTTTCAACTATAAAAGAACGTTTTAGCCGGGCAGTGGTGGCGCAACGT
CTTTAATCCCAGCACTTGGGAGGCAGAGGCAGACGGATTTCTGAATTTCT
GAAAGGCCAGTCTTGTTAAACAGTTCCTTTCAGGCCAGCCTGGTCTACAG
AGTGAGTTCTGGGGCAGTCAGGGCTACACAGGGAAAGCCAGTCTGGGGGT
GAGGAGTGGGGGCTTAGGGGGGAGAAAATATTTTTTTTTGGTTTGNNGGG
GNTNTNNTTTGGTTTTTGTTTTTTTTTGTTGTGNNGTTTTGGTGTTGTTT
TTTTTNTTTTTTTNNTTGATTGTTTTTTTTNTTTTGTGGTTTGTATTTGT
TTGTGGTGTTTTTTGGGTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no507_k21.g1 MSMg01no507_k21.g1 CHROMAT_FILE:
MSMg01no507_k21.g1 PHD_FILE: MSMg01no507_k21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:18 2005
         (529 letters)



>mm_chr17_35085158_35086086
          Length = 929

 Score =  551 bits (285), Expect = e-161
 Identities = 318/329 (96%), Gaps = 2/329 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagacgctgtggttggtagcacaagaattagttgtcctggcctggagtgagagcgctca 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 acagatgctgtggttggtagcacaagaattagttgtcctggcctggagtgagagcgctca 269

                                                                       
Query: 61  ggagactattcttccctgaaggactgctggcaattcatggtcgctggggacaccacgctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 268 ggagactattcttccctgaaggactgctggcaattcatggtcgctggggacactacgctg 209

                                                                       
Query: 121 acatcgtcttttttaaaaattttaaataagtttcgattttatgtgtatgggtgttttgct 180
           |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 208 acatcgtctttttttaaaattttaaataagcttcgattttatgtgtatgggtgttttgct 149

                                                                       
Query: 181 gccatgtttgtctgggcaccaggcatgcacatggtacacatgtaggcaaaatgctcaaat 240
           |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 148 gccatgtttgtctgggcaccaggcatgcacgtggtgcacatgtaggcaaaatgctcaaat 89

                                                                       
Query: 241 gctcataagaataaaataaataaattgttaagttttaggctggattacttaaatgcaggt 300
           |||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||
Sbjct: 88  gctcataagaataaaataaacaaattgttaagttttaggctggattatttagatgcaggt 29

                                        
Query: 301 gattacag-acaaacaacttaaaatcttt 328
           ||||| || ||||||||||||||||||||
Sbjct: 28  gatta-aggacaaacaacttaaaatcttt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space:   476961
Effective search space used:   476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)