BAC Information

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BAC

Clone NameMSMg01-509N21
Chromosome17 (Build37)
Map Location 37,939,605 - 37,940,154
singlet/doubletsinglet
Overlap genenone
Upstream geneH2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91, Olfr92, EG224763, LOC667973, Olfr93, Olfr753-ps1, LOC630355, Ubd, Olfr94, Olfr95, Olfr96, Olfr97, Olfr754-ps1, Olfr98, H2-M3, Olfr755-ps1, Olfr99, Olfr756-ps1, Olfr101, Olfr102, Olfr103, Olfr104, GA_x5J8B7W5KGR-1115818-1115257, Olfr105, Olfr758-ps1, Olfr106, Olfr107, Olfr759-ps1, Olfr108, Olfr760-ps1, Olfr109, H2-M2, Olfr110, Olfr111, Olfr112, Olfr113, Olfr114, Olfr115, Olfr116, Olfr117, Olfr118, Olfr119, Scocp, Olfr120, Olfr1558-ps1, Olfr121, Olfr122, Olfr123
Downstream geneOlfr124, Olfr125, LOC672822, Olfr126, Olfr127, Olfr128, Ppia-ps17_697.1, Olfr761, Olfr1552-ps1, LOC100043265, Olfr129, Olfr130, Olfr131, Olfr132, Olfr133, Olfr134, Olfr135, Olfr138, Olfr137, Olfr762-ps1, Olfr136, LOC626985
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509N21.T7 (MSMg01no509_n21.b1)MSMg01-509N21.TJ (MSMg01no509_n21.g1)
ACCAG583440AG583441
length794798
length of high quality
(start - end)		647 (49 - 695)550 (75 - 624)
definitionCHROMAT_FILE: MSMg01no509_n21.b1 PHD_FILE: MSMg01no509_n21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:15 2005CHROMAT_FILE: MSMg01no509_n21.g1 PHD_FILE: MSMg01no509_n21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAAGATGCGCG
GAATTCAAGGCCCTTACCTAAATATGATAAAAGCAATCTACAGCAAACGA
GTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATGCCACTAAA
ATCAGGGACTAGACAAGGCTGCCCACTTTTTCCCTATCTTTTCAACATAG
ATCTCGAAGTTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGAT
ACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATAA
TAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAACCTG
ATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATTAACTCAAACAAGTC
AATGGCCTTTCTATACACAAAGAATAAACAGGCTGAGAAAGAAATTAGGG
AAACAACACCCTTCTCAATAGTCACAAATAATCGGTGTGACTCTAACTAA
GGAAGTGAAAGATCTGTATGATAAAAACTTCAAGTCTCTGAAGAAAGAAA
TTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTGGC
AGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATT
CAATGCAATTCCCATCAAAATTCCAACTCAATTCTTCAACGAATTAGAAG
GAGCAATTTGCAAATTCATCTGGAGCAACAAAAAAACGAGGATAGCAAAA
CCTCTTCTCAGGGAAAAAGAACCTCTGGTGGAATCACCATGCCN

CCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATCTTGAGAGAACTTCAAATTGGGTG
TTCTTTTTGGGTAACTATAAGACTTTATGAACAAGAGCATGTAGTAAACT
ATATACTATAGGTGACTACTTCATAATATTTAAATTTGAATTTTAAAAGA
ATTCTGATATATTACATTAGTATCTTGCTATCACTACTTTTTCTTGTCTT
TAATCTTAATGAGTTCCTTTAATATTTTTCTCCAGAAAAACCTTTCACTT
TTTCATTACATGCCTGAGGCATAGTAAGAAATATTATATATTTATCCTTC
TACCTCTATTTATAAAATTCCTATCAATAATCAATAAATATATATATTTT
ACTTTGTAAGAATCAGTGGGCTTTGAGTGTATCACTTCATAACTTTTAAG
GAGTCTACCCGTTAAAACAAATCAAAGTACTTAGATATAAACTCTGTATT
GTTTTCAGAACCATTGAAAATTGTAATTCATTTATTTTGTAATTAAAGAC
AAACAACTGTACCATTTGATATATGATATAAATTGTAATGTAAGAAACAG
CATTAATGTGATTAACTTATACAGTAAAATCACTATAAAATTGCTCCAGA
AATTTCCAGATGCCTATGACCATCTATGGAAAACTAAGTTGATTATTGAG
ACTTCTACCCTTATAAATAGTTCTTTTTACCACATAATTTCATTCCTCAT
TTCAAATTATCCCATATATTCCACTCTTTTTCACTTCCTTCCAGGGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_n21.g1 MSMg01no509_n21.g1 CHROMAT_FILE:
MSMg01no509_n21.g1 PHD_FILE: MSMg01no509_n21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:15 2005
         (550 letters)



>mm_chr17_37939405_37940354
          Length = 950

 Score = 1048 bits (542), Expect = 0.0
 Identities = 548/550 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcttgagagaacttcaaattgggtgttctttttgggtaactataagactttatgaacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 atcttgagagaacttcaaattgggtgttctttttgggtaactataagactttatgaacaa 691

                                                                       
Query: 61  gagcatgtagtaaactatatactataggtgactacttcataatatttaaatttgaatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 gagcatgtagtaaactatatactataggtgactacttcataatatttaaatttgaatttt 631

                                                                       
Query: 121 aaaagaattctgatatattacattagtatcttgctatcactactttttcttgtctttaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 aaaagaattctgatatattacattagtatcttgctatcactactttttcttgtctttaat 571

                                                                       
Query: 181 cttaatgagttcctttaatatttttctccagaaaaacctttcactttttcattacatgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 cttaatgagttcctttaatatttttctccagaaaaacctttcactttttcattacatgcc 511

                                                                       
Query: 241 tgaggcatagtaagaaatattatatatttatccttctacctctatttataaaattcctat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 tgaggcatagtaagaaatattatatatttatccttctacctctatttataaaattcctat 451

                                                                       
Query: 301 caataatcaataaatatatatattttactttgtaagaatcagtgggctttgagtgtatca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 caataatcaataaatatatatattttactttgtaagaatcagtgggctttgagtgtatca 391

                                                                       
Query: 361 cttcataacttttaaggagtctacccgttaaaacaaatcaaagtacttagatataaactc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 cttcataacttttaaggagtctacccgttaaaacaaatcaaagtacttagatataaactc 331

                                                                       
Query: 421 tgtattgttttcagaaccattgaaaattgtaattcatttattttgtaattaaagacaaac 480
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 330 tgtattgttttcagaaccattgaaaattgaaattcatttattttgtaattaaagacaaac 271

                                                                       
Query: 481 aactgtaccatttgatatatgatataaattgtaatgtaagaaacagcattaatgtgatta 540
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 agctgtaccatttgatatatgatataaattgtaatgtaagaaacagcattaatgtgatta 211

                     
Query: 541 acttatacag 550
           ||||||||||
Sbjct: 210 acttatacag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space:   507600
Effective search space used:   507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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