BAC Information

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BAC

Clone NameMSMg01-510L17
Chromosome17 (Build37)
Map Location 32,801,229 - 32,801,581
singlet/doubletsinglet
Overlap geneEG631304
Upstream geneCryaa, Snf1lk, Hsf2bp, Rrp1b, LOC435518, Notch3, Pdxk-ps, Abhd9, Brd4, LOC100043434, LOC100043433, Akap8, Akap8l, Wiz, A430107D22Rik, Pglyrp2, 4732474A20Rik, EG208285, Cyp4f16, LOC667178, LOC677156
Downstream geneCyp4f15, LOC623809, 9030612M13Rik, Zfp811, 6030490I01Rik, LOC631266, BC066107, Cyp4f14, Cyp4f13, 6030422M01Rik, Zfp472, C920016K16Rik, 1700065O13Rik, 4921501E09Rik, Zfp563, Morc2b, LOC100038859, LOC100038860, LOC100043474, Zfp422-rs1, Olfr63, LOC100043468, Zfp81, Zfp101, 1700029I08Rik, LOC100042953, Adamts10, Myo1f, Zfp414, Pram1, Hnrpm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510L17.T7 (MSMg01no510_l17.b1)MSMg01-510L17.TJ (MSMg01no510_l17.g1)
ACCAG584099AG584100
length753758
length of high quality
(start - end)
682 (72 - 753)353 (327 - 679)
definitionCHROMAT_FILE: MSMg01no510_l17.b1 PHD_FILE: MSMg01no510_l17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:23 2005CHROMAT_FILE: MSMg01no510_l17.g1 PHD_FILE: MSMg01no510_l17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAAATCGCGCGGAAT
CATCTTGGTTACTTTACCTTTGATAAGTATGAAGTGTCCCTCCTTATCTA
TTTCGACAATTTTAGATTGAAAGTAAAGCAAGTGAAAGATCTGTTTGATA
AGAACTTCAAGTCTCTGAAGAAAGAAATCAAAGAAGATCTCAGAAGATGG
AAAGATCTCCCATGCTCATGGATTGGCAGGATTAATACAGTAAAAATGGT
CATCTTGCTAAAAGTAATCTACAGATTCAATGCAATCCGTATCAAAATTC
CAACTCAGTTCTTCATATTGTTATAAAGAACAATGTGAAAATTCATCTGG
AATAACAAAAAACCTCAGATGGTGAAAACTATTTTCAACAATAAAGGAAC
TTCTGGTGGAATCACCATCACTGACCTCAAGCTGTACTACAGAGCAACTG
TGATAAAAACTACATGGTATTGGGAAAGTGACAGGCAGGTAGATCAATGG
AATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGTCACTTGAT
CTTTGACAAAGGAGCTAAAACCATCCAATGGAAAAAAGACAGCATTTTCA
ACAAATAGTGCTGTTCAACTAGTGGTTAACTTGTAGAAGGATGAAAATTG
ATCCATTCTTATCTCCTTGTACAAAGCTCAAGTACAAGTGGATCAAGGAA
CTCCACATAAAACCAGAGACACTGGAGCTTATAGAGGAGAAAGTGGGGAA
GAG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTCAGAAAAACCATGGCTTCCCACAGCCAGACACACAC
CCGGGGCCCGTATGGAAAGCGTCCATTGCACCAGAACTCTGGCAGGATGC
AGGTTTACTCCCACTCCCTTTTTCCCCCACACCCACGGGCCCACACCATG
GCTCTGACATCTGCCAGGAAGGCTGTCTGCTCTCTGTGCATGGCTAGGTC
TTTGTTGGGTGTGAGTGCTGTCCACCTGGTTTAGTTCAAAGAAATAAAGG
GAATCTGTAGACTGTGAATGCTTGTCTGGGAGAATTGTCTTCAGGTCTGT
TTTACCTTCCCAGGCCTCGCTTTTCCTTTCAGACAAGCATTTTCAACAAG
GTCTAAGTGATGAGTCTCAGACCATGAGACAACCTGTCTCATGCGTGGCG
TTCCCAGGAGTTCTGGGCTTGTAACTAATTTGAATTTGCTGCCCTGAACC
ACAAGACAGAGAGTCCTTATTAAGTCACCGTCTCTACGCGATCTTGGGAA
GACCTGGGAAATGCAAAGCAGATAGATGCACTGGTAAGAATCCAGGATAC
TGATGTAAAGTCTCAGGATCAGGTCTCAGATACTTCACTTACTATGTGGG
AGACTGAGCTCAATGGACTTGAATGCCTGGCCTTCAGTCTGGAGAAGGGT
AGGGAAGAGAACCCAGGTGTTTGAGATCGTAAGAGTGAATGTGTCTTTCT
GTCCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_l17.g1 MSMg01no510_l17.g1 CHROMAT_FILE:
MSMg01no510_l17.g1 PHD_FILE: MSMg01no510_l17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:23 2005
         (353 letters)



>mm_chr17_32801029_32801781
          Length = 753

 Score =  652 bits (337), Expect = 0.0
 Identities = 349/353 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgggagaattgtcttcaggtctgttttaccttcccaggcctcgcttttcctttcagacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgggagaattgtcttcaggtctgttttaccttcccaggcctcgcttttcctttcagacaa 260

                                                                       
Query: 61  gcattttcaacaaggtctaagtgatgagtctcagaccatgagacaacctgtctcatgcgt 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 261 gcattttcaacaaggtctaagtgatgagtctcagaccacgagacaacctgtctcacgcgt 320

                                                                       
Query: 121 ggcgttcccaggagttctgggcttgtaactaatttgaatttgctgccctgaaccacaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcgttcccaggagttctgggcttgtaactaatttgaatttgctgccctgaaccacaaga 380

                                                                       
Query: 181 cagagagtccttattaagtcaccgtctctacgcgatcttgggaagacctgggaaatgcaa 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 381 cagagagtccttattaagtcaccgtctctatgcgatcttgggaagacctgggaaacgcaa 440

                                                                       
Query: 241 agcagatagatgcactggtaagaatccaggatactgatgtaaagtctcaggatcaggtct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcagatagatgcactggtaagaatccaggatactgatgtaaagtctcaggatcaggtct 500

                                                                
Query: 301 cagatacttcacttactatgtgggagactgagctcaatggacttgaatgcctg 353
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagatacttcacttactatgtgggagactgagctcaatggacttgaatgcctg 553


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 753
Length adjustment: 9
Effective length of query: 344
Effective length of database: 744
Effective search space:   255936
Effective search space used:   255936
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)