Query= MSMg01no511_f24.b1 MSMg01no511_f24.b1 CHROMAT_FILE:
MSMg01no511_f24.b1 PHD_FILE: MSMg01no511_f24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:14 2005
(513 letters)
>mm_chr17_79431848_79432760
Length = 913
Score = 948 bits (490), Expect = 0.0
Identities = 505/514 (98%), Gaps = 8/514 (1%)
Strand = Plus / Plus
Query: 4 gaattcatgtattttcc----atttgctaccaatgtgacaacatgagaggtagtggacct 59
||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcatgtatt----gaagatttgctaccaatgtgacaacatgagaggtagtggacct 259
Query: 60 ttaagaaacaggccaagtccgaggtaattaagctccggtgaaggtagtagcctgggaagg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ttaagaaacaggccaagtccgaggtaattaagctccggtgaaggtagtagcctgggaagg 319
Query: 120 agttgctatagtctaggatgactcttttgctttgtttttgtttgtgtgtaatgctcaagg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agttgctatagtctaggatgactcttttgctttgtttttgtttgtgtgtaatgctcaagg 379
Query: 180 tcaaatccaaggccgtgcacctgctgagcatgtgctgtaccatgaactacaccctacacc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tcaaatccaaggccgtgcacctgctgagcatgtgctgtaccatgaactacaccctacacc 439
Query: 240 ctacaccatgcatacactatacaccctacaccatacatcctgcaccatacaccatatacc 299
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 440 ctacaccatgcatacactatacaccctacaccatacaccctgcaccatacaccatatacc 499
Query: 300 ctacaccatacaccatacagcctacaccatacatacaccctacactctacatcctacatc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ctacaccatacaccatacagcctacaccatacatacaccctacactctacatcctacatc 559
Query: 360 ctacatacaccatacaccctacatacaccctacaccctacaccctataccctacacgata 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctacatacaccatacaccctacatacaccctacaccctacaccctataccctacacgata 619
Query: 420 catacaccatacaccacacaccatacaccatacaccacacaccatacaccacacaccaca 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 catacaccatacaccacacaccatacaccatacaccacacaccatacaccacacaccaca 679
Query: 480 caccatacactatacactatatactatacactat 513
||||||||||||||||||||||||||||||||||
Sbjct: 680 caccatacactatacactatatactatacactat 713
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 69
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space: 454209
Effective search space used: 454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no511_f24.g1 MSMg01no511_f24.g1 CHROMAT_FILE:
MSMg01no511_f24.g1 PHD_FILE: MSMg01no511_f24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:14 2005
(496 letters)
>mm_chr17_79579461_79580356
Length = 896
Score = 959 bits (496), Expect = 0.0
Identities = 496/496 (100%)
Strand = Plus / Minus
Query: 1 agttgctctggaaacaggtcttgacaatggctgtgtgtgccaaagggctgagcttgcaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 agttgctctggaaacaggtcttgacaatggctgtgtgtgccaaagggctgagcttgcaga 637
Query: 61 gggcactgggttcccgcctcttgagtgatcttagggctttgctctccaaacagatgactt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 gggcactgggttcccgcctcttgagtgatcttagggctttgctctccaaacagatgactt 577
Query: 121 cattctgacaacaatgtttattttctgaggagctgccagttcatgcacattataaaataa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 cattctgacaacaatgtttattttctgaggagctgccagttcatgcacattataaaataa 517
Query: 181 attctctcattgacattggagggacaggaaatacaaacacagcctttattaaaagtatgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 attctctcattgacattggagggacaggaaatacaaacacagcctttattaaaagtatgt 457
Query: 241 gaattggaaaaggtaagctggaaaagaaacaaggtttctcccaaaaaaagaacggtggta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gaattggaaaaggtaagctggaaaagaaacaaggtttctcccaaaaaaagaacggtggta 397
Query: 301 actatggaaactaactacccaatcagcaactatttcatcagcttccatattaattaagtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 actatggaaactaactacccaatcagcaactatttcatcagcttccatattaattaagtg 337
Query: 361 tgtatagctacacacaactcctttattgtagggaatcttacctcagcttgaataaggtgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtatagctacacacaactcctttattgtagggaatcttacctcagcttgaataaggtgt 277
Query: 421 tttgaagattaggctccaataatgtccacatttttctctttaattcctgtaaatctagct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tttgaagattaggctccaataatgtccacatttttctctttaattcctgtaaatctagct 217
Query: 481 ccactaaaggaagaag 496
||||||||||||||||
Sbjct: 216 ccactaaaggaagaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space: 430596
Effective search space used: 430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
