Query= MSMg01no513_d04.b1 MSMg01no513_d04.b1 CHROMAT_FILE:
MSMg01no513_d04.b1 PHD_FILE: MSMg01no513_d04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:37 2005
(709 letters)
>mm_chr17_64052321_64053429
Length = 1109
Score = 716 bits (370), Expect = 0.0
Identities = 397/410 (96%), Gaps = 8/410 (1%)
Strand = Plus / Minus
Query: 5 gaattcattaaaaagtttctaaaatattcatttccttaacctctccaatgtcatatttat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 gaattcattaaaaagtttctaaaatattcatttccttaacctctccaatgtcatatttat 351
Query: 65 gtctcttttcctttacactaaaagttctggtttagggtgcatgtgtgcagatctgttttg 124
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gtctcttttcctttagactaaaagttctggtttagggtgcatgtgtgcagatctgttttg 291
Query: 125 atgaaaatggttttagagtttcaggatcagtgtcactcttaacagcaaacaaaatgatgg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 atgaaaatggttttagagtttcaggatcagtgtcactcttaacagcaaacaaaatgatgg 231
Query: 185 ataaaatttaagatttcttggcatgttttctttcttgttttctttctttctttctttctt 244
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 ataaaagttaagatttcttggcatgttttctttcttgttttctttctttctttctttctt 171
Query: 245 tctttctttctttctttctttcttt------ctttctttctt--ttccttccttccttcc 296
||||||||||||||||||||||||| ||| ||| ||| ||||||||||||||||
Sbjct: 170 tctttctttctttctttctttcttttccttccttccttccttccttccttccttccttcc 111
Query: 297 ttccttccttctttccctcctgtctctgtctctgtctctgtctctgtctctgtctctgtc 356
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 ttccttccttccttccctcctgtctctgtctctgtctctgtctctgtctctgtctctgtc 51
Query: 357 tctctctctctctctctctcgtttgtttgtttgcattttggtcaccactt 406
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50 tctctctctctctctctctcgtttgtttgtttgcattttggtcaccactt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 72
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 709
Length of database: 1109
Length adjustment: 10
Effective length of query: 699
Effective length of database: 1099
Effective search space: 768201
Effective search space used: 768201
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no513_d04.g1 MSMg01no513_d04.g1 CHROMAT_FILE:
MSMg01no513_d04.g1 PHD_FILE: MSMg01no513_d04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:37 2005
(375 letters)
>mm_chr17_63909167_63909941
Length = 775
Score = 677 bits (350), Expect = 0.0
Identities = 368/374 (98%), Gaps = 1/374 (0%)
Strand = Plus / Plus
Query: 1 tgccaaacatgagacacaaaggcttttaattaaatccagcatcttaaatatattactcaa 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 tgccaaacatgagacacaaaagcttttaattaaatccagcatcttaaatatattattcaa 260
Query: 61 atctctcttgtgcccttttttggcagctttaatttttaaaatgtattctttgacactttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 atctctcttgtgcccttttttggcagctttaatttttaaaatgtattctttgacagtttc 320
Query: 121 tttttatttatttatttgttattgaaaatagatttttttcatacaatatattctgattat 180
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 ttttcatttatttatttgttattgaaaatagatttttt-catacaatatattctgattat 379
Query: 181 ggcttcccctccccccaccactgcagcttctcctcacttcctctccacctacccgcagcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ggcttcccctccccccaccactgcagcttctcctcacttcctctccacctacccgcagcc 439
Query: 241 cttttaaatctctctcattagacaatgaacaaacatctactaaaaaaggcaaggaagaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cttttaaatctctctcattagacaatgaacaaacatctactaaaaaaggcaaggaagaag 499
Query: 301 gaggaagaggaagaagaggaggagggaagaggaagaagagggagagagggagggaaggca 360
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 500 gaggaagaggaagaagaggaggagggaagaggaagaggagggagagagggagggaaggca 559
Query: 361 gggaaggagggagg 374
||||||||||||||
Sbjct: 560 gggaaggagggagg 573
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space: 280356
Effective search space used: 280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
