BAC Information

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BAC

Clone NameMSMg01-514A18
Chromosome17 (Build37)
Map Location 35,669,615 - 35,670,229
singlet/doubletsinglet
Overlap genePsors1c2
Upstream geneBtnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1, Tnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1
Downstream geneCdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-514A18.T7 (MSMg01no514_a18.b1)MSMg01-514A18.TJ (MSMg01no514_a18.g1)
ACCAG586624AG586625
length7291,471
length of high quality
(start - end)
619 (40 - 658)---
definitionCHROMAT_FILE: MSMg01no514_a18.b1 PHD_FILE: MSMg01no514_a18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:44:47 2005CHROMAT_FILE: MSMg01no514_a18.g1 PHD_FILE: MSMg01no514_a18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:44:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
TTAGATGTCACTGCCTGGGAAGTTCCCAGTGACTGACTGAGGTGACATGC
CAGAGAGCATGGTCCAGAGGGGAGTGGGGGGGACGGAGCTCCGAGGCTGA
GATGCCAGTCTAGAGGGTGCTTTCTGACCCAGGCGTCCCGCCTCTGCCTC
TAATTACCAAGCTTCCCCACGCGAGGTTTGCCCCCATTTTGTGGCTTCCA
ATAACTATCACGGATGAAAGGTAGCCTTCCTTGTGATTATAAAGATGACA
GGTGGGTCCTGATTCCTGCCGGGTGTGGGTGGAGGAGGTGTGAAAACAAG
GGTGGAGCCTCCTGGGGTCTGGGTCACTGATAGACACGGCTGCCCCCGGC
CCCCGGGACTGGGGGACAGAAAAGAGGGATGCTTACTGGCAGGTTCTTTG
TAAACGGGTTTGACCAGTTAGGCTCTGGTAGGGATTCCTTAGGGTGCTGA
GCTGGCCCCTCCCCACAGACTGGCCACCCCCTCTACCTCCTCTGCTATAA
AGCCTCTTAGGTTCTCAAGCACCTAGACTCGGAGCACCCCGCCTTGGGGG
CCAGTAGACAGCCACGATGCTCACCTGGAAGCTGCTAAGCCTGCTGGTCC
TTTGCCTGTGTGCAGGAGGTGAGTCGTCAGAACAGGCCAGGAGCACAGCT
GGGGTGCTGGAGATGGTCGAAATGACCCC
ACTTGTTCCATCTCCCCAGCGCGGGCGGTTATATCCACGTTGCTTCTCAG
CCTCTGCTCTGTAGACATTCTACGGACGCGGGACTCCTTTGTTTAAGGGG
TCCGTAGCGTGCTGAGGCGCCGGGTGCAGCGTATAACTATTCGGTGCACA
GACGATATTTATAAAAACTCCTCTCGGCACAGCGCCGCGGCGCCAGAGGT
TGTGTTCTCAACCCCGTTTGGTGGTTTGCCGTATTGTAATAGCAGCCAGC
CGAAACAACGCACGGACAACCACGTCGATAGGCACGTGGATTATTTGGTC
ATAGCCGATGGGAGATATACAATCCGCAAATCGTCGGCGTATTAGCGCCG
GAAGTGTAATAAATATCAGTCAGGCCACTAGGAGTGTATCGACCGCCGAC
GAGTATATACTGCATTATCTGTAGTCTATCGAGAGGCGAAGCGCATCAGC
GGGAGACAGTTAACGGGAAATATCCATACAATATATCCACTGCCGCAACA
CGCGGTGATGCAGCACGAGCAACCGAACCTGCGATTTGATCCGATCGGTA
TATCTCTGGATGAGATATCTGGAGTCGCATACAGATCGCGCTAGGAACGA
GACAGTATATGTTCCTAAGTTGCGCGGGTTATGCATACGGCCCGCACTAA
GTATGACTCGATCGCCCGACATAAAATGTGATCTGTTGCACGCCTCAATA
TTACATTATGACGCTTAGAAATAGCTCCTCACACTAAGATTGTGTCGGTG
TCTTATATCCCGATGATTAGTATATGAAGTGGTATGGGCGTATATACAAC
CGTCCGACAATATATATCACACACTACTCCGTAGCGTGTACTACAATGCA
ATCGCAATCATGCGCGGATTGCGCGCGCGAGACTGGCGAGTGCGAGTACA
TTATTACGATGATCTGAGTATACATCGCTCACTAGTCGGTATCGTTCGAT
GCGTCTATCGAACACCGGCGTGATATCTGATACTGTGTAGTACGCACAGT
TTGTGAATGATTGAGCGTTCTACNATTCGCTGCTGCTTACAGTGGATGGA
ATGTGTATAATATTATGTTCGTGTACTAGGCGCGCGATACTCGACCAGGA
CGCTCATTTCAGTCCACGACATGTTGATCATTAGCGCGCCGCTAATCGGT
AGTGGGTGTCGATTGATACGTGATGTCAGACGGTCGCGTGCGGAGTGAAT
GCGTATANCGCGGCGCTGCCTCATCAGTAGATNACTCATATGCAAGATAT
GTNTGGCGCGCTATCGGTACACAGCCACGCTCGTATGATGTTATGCAGTG
CACGCACAACACTACGTCAGATGACTGCGATCATGTATGTGTGTACACAC
GACATATATGAGTACGCCGAGTCTGTGCGGCGCGCAGCTCGCTCGATGTA
GCTAGCACTANACNTACTCACTATCGCGCGTAGACACGTCCTCCGTATGT
ATTAATCTGCCACTCGCACTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no514_a18.b1 MSMg01no514_a18.b1 CHROMAT_FILE:
MSMg01no514_a18.b1 PHD_FILE: MSMg01no514_a18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:47 2005
         (619 letters)



>mm_chr17_35669412_35670429
          Length = 1018

 Score = 1152 bits (596), Expect = 0.0
 Identities = 611/616 (99%), Gaps = 1/616 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccttagatgtcactgcctgggaagttcccagtgactgactgaggtgacatgcca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccttagatgtcactgcctgggaagttcccagtgactgactgaggtgacatgcca 263

                                                                       
Query: 64  gagagcatggtccagaggggagtgggggggacggagctccgaggctgagatgccagtcta 123
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 264 gagagcatggtccagaggggagtgggggg-acggagctccgaggctgagatgccagtcta 322

                                                                       
Query: 124 gagggtgctttctgacccaggcgtcccgcctctgcctctaattaccaagcttccccacgc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gagggtgctttctgacccaggcgtcccgcctctgcctctaattaccaagcttccccacgc 382

                                                                       
Query: 184 gaggtttgcccccattttgtggcttccaataactatcacggatgaaaggtagccttcctt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gaggtttgcccccattttgtggcttccaataactatcacggatgaaaggtagccttcctt 442

                                                                       
Query: 244 gtgattataaagatgacaggtgggtcctgattcctgccgggtgtgggtggaggaggtgtg 303
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 443 gtgattataaagatgacaggtgggtcctgattcctgccgggtgtggatggaggaggtgtg 502

                                                                       
Query: 304 aaaacaagggtggagcctcctggggtctgggtcactgatagacacggctgcccccggccc 363
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 503 aaaacaagggtggagcctcctggggtctgggtcactgatagacccggctgcccccggccc 562

                                                                       
Query: 364 ccgggactgggggacagaaaagagggatgcttactggcaggttctttgtaaacgggtttg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ccgggactgggggacagaaaagagggatgcttactggcaggttctttgtaaacgggtttg 622

                                                                       
Query: 424 accagttaggctctggtagggattccttagggtgctgagctggcccctccccacagactg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 accagttaggctctggtagggattccttagggtgctgagctggcccctccccacagactg 682

                                                                       
Query: 484 gccaccccctctacctcctctgctataaagcctcttaggttctcaagcacctagactcgg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gccaccccctctacctcctctgctataaagcctcttaggttctcaagcacctagactcgg 742

                                                                       
Query: 544 agcaccccgccttgggggccagtagacagccacgatgctcacctggaagctgctaagcct 603
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 743 agcaccccgccttgggggccagtagacagccatgatgctcacctggaagctgctaggcct 802

                           
Query: 604 gctggtcctttgcctg 619
           ||||||||||||||||
Sbjct: 803 gctggtcctttgcctg 818


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1018
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1008
Effective search space:   613872
Effective search space used:   613872
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)