Query= MSMg01no514_a21.b1 MSMg01no514_a21.b1 CHROMAT_FILE:
MSMg01no514_a21.b1 PHD_FILE: MSMg01no514_a21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:48 2005
(596 letters)
>mm_chr17_32383323_32384315
Length = 993
Score = 1085 bits (561), Expect = 0.0
Identities = 585/597 (97%), Gaps = 9/597 (1%)
Strand = Plus / Minus
Query: 5 ggaattcgtgtgtagtttgttgggtgttacatattaaaaaaatatgtcttaaaaggaaaa 64
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 ggaattcgtgtgtagagtgttgggtgttacatattaaaaaaatatgtcttaaaaggaaaa 721
Query: 65 aggaacaatagaaacatgaaaagtattgcattggatagagcaggagatgtgtaggttctg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 aggaacaatagaaacatgaaaagtattgcattggatagagcaggagatgtgtaggttctg 661
Query: 125 tgaattcaggctttctagggtagaactagaacctggaggcacagaatatggtggcctgtc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 tgaattcaggctttctagggtagaactagaacctggaggcacagaatatggtggcctgtc 601
Query: 185 cgtggaggagagggcagtccaatttgcctaggttcttccatggcttggtgttctgtgtta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 cgtggaggagagggcagtccaatttgcctaggttcttccatggcttggtgttctgtgtta 541
Query: 245 aaatgatggaaaagtcttctctcaggcttaggacatttatttatttgggtggtgttttgg 304
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 540 aaatgatggaaaagtcttctctcaggcttaggac----atttatttgggtggtgttttgg 485
Query: 305 gttgttcttgtaccactttttatcactaaaagggtgtaagtttatactggatttaataag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gttgttcttgtaccactttttatcactaaaagggtgtaagtttatactggatttaataag 425
Query: 365 gtttttctttttcaacacccttggtatgtttctttacctgaaagtctagtgcattttgat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gtttttctttttcaacacccttggtatgtttctttacctgaaagtctagtgcattttgat 365
Query: 425 gccatttctgtggcagctagtgaaatccaagggagcagattgcatttttgtgatcatagg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 gccatttctgtggcagctagtgaaatccaagggagcagattgcatttttgtgatcatagg 305
Query: 485 attagttgaaagcacatctaaaattctgttgtaagtctcggctgcttttttgaagagaat 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 attagttgaaagcacatctaaaattctgttgtaagtctcggctgcttttttgaagagaat 245
Query: 545 tgagcttatccagtacaatttgggcggg-ggggggggggg----ttcgagacagggt 596
|||||||||||||||||||||||||||| ||||||||||| ||| |||||||||
Sbjct: 244 tgagcttatccagtacaatttgggcgggcgggggggggggggcgttcaagacagggt 188
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 993
Length adjustment: 10
Effective length of query: 586
Effective length of database: 983
Effective search space: 576038
Effective search space used: 576038
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no514_a21.g1 MSMg01no514_a21.g1 CHROMAT_FILE:
MSMg01no514_a21.g1 PHD_FILE: MSMg01no514_a21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:48 2005
(540 letters)
>mm_chr17_32211383_32212322
Length = 940
Score = 967 bits (500), Expect = 0.0
Identities = 525/540 (97%), Gaps = 13/540 (2%)
Strand = Plus / Plus
Query: 1 cttcctagcatccgggaggtggaaggagacgctttgaggcaggatcaaagtcctactggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttcctagcatccgggaggtggaaggagacgctttgaggcaggatcaaagtcctactggg 260
Query: 61 ctaccctgggctaatgcagcttccttactaagctctggaaagtgaaagcaaaagccaatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaccctgggctaatgcagcttccttactaagctctggaaagtgaaagcaaaagccaatt 320
Query: 121 ctgacttggctactagggggccggacccagtgcttgctggctggcagggctgcagacagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgacttggctactagggggccggacccagtgcttgctggctggcagggctgcagacagt 380
Query: 181 tctttggaaagcctgacctcggccagcacctctgcccatgctcaaagcactaatcatttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctttggaaagcctgacctcggccagcacctctgcccatgctcaaagcactaatcatttc 440
Query: 241 ttcttagtcacgtgctctgggccttatcccctggcttccaaggcaacctccaatttctcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcttagtcacgtgctctgggccttatcccctggcttccaaggcaacctccaatttctcc 500
Query: 301 ttagactgtggcttctgtgaagaagcaaggcaaatctcaagaactgaagtgcattaaagt 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 501 ttagactgtggcttctgtgaagaagcaaggcaaatctcaagaactgaagttcattaaagt 560
Query: 361 gggtgtgggtgctgactgaggtcaagggatgttgtgaacagacagccccactcacagtca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gggtgtgggtgctgactgaggtcaagggatgttgtgaacagacagccccactcacagtca 620
Query: 421 tgactggggatccccaaactctgggaagtagagcccaaacaaaaaaaaaacaaaaaaaac 480
||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 621 tgactggggatccccaaactctgggaagtagagcc-----------aaaacaaaaaaaac 669
Query: 481 aaaaaaaaacaaaaaaaaaaaaacctcacccttgagcagtaggcaatgggacatgtcaca 540
|||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 670 aaaaaaaa-caacaaaaaaaaaac-tcacccttgagcagtaggcaatgggacatgtcaca 727
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space: 492900
Effective search space used: 492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
