Query= MSMg01no514_j13.b1 MSMg01no514_j13.b1 CHROMAT_FILE:
MSMg01no514_j13.b1 PHD_FILE: MSMg01no514_j13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:33 2005
(691 letters)
>mm_chr17_44314138_44315228
Length = 1091
Score = 1230 bits (636), Expect = 0.0
Identities = 648/652 (99%)
Strand = Plus / Minus
Query: 40 aataatatcttatgacttgattgttttttaaagcagacagagcacctttcagtataatga 99
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1086 aatactatcttatgacttgattgttttttaaagcagacagagcacctttcagtataatga 1027
Query: 100 aaaggtcaaaaaccggaatccagaaactccaaagactttagagacctggagtgtggccat 159
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1026 aaaggtcaaaaaccggaatccagaaactccaaagactttagagacctggagtgtggtcat 967
Query: 160 ccatgctcactgagcctcagtttccctatctataaaatggggatgagagaccccggagtt 219
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966 ccatactcactgagcctcagtttccctatctataaaatggggatgagagaccccggagtt 907
Query: 220 aggtcatttccagctgttatctttatttgtaacacaatccactcctacagatatgagcaa 279
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 906 aggtcatttccagctgttatctttatttgtaacacaatccactcctacagatgtgagcaa 847
Query: 280 cagtgtcaacgtcctttcaaggacctctaggaacaagtgtatatttaagtctatttcctt 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 cagtgtcaacgtcctttcaaggacctctaggaacaagtgtatatttaagtctatttcctt 787
Query: 340 ctcccatttatctctttacacagacattcctccctaggtttccttagaaaggcaataaaa 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 ctcccatttatctctttacacagacattcctccctaggtttccttagaaaggcaataaaa 727
Query: 400 ctctgtgtgtgcttttccctttggcagtgaggcaaacactaagaaaatacaaaaatatgt 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ctctgtgtgtgcttttccctttggcagtgaggcaaacactaagaaaatacaaaaatatgt 667
Query: 460 ggaggaggtaaaatatgtcgtagaaggttctggtctatccctccctggggtgacagcttt 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 ggaggaggtaaaatatgtcgtagaaggttctggtctatccctccctggggtgacagcttt 607
Query: 520 ctctctattctgtcgtattctttattcacttgtgcaattcagaactgaattgcctggaag 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ctctctattctgtcgtattctttattcacttgtgcaattcagaactgaattgcctggaag 547
Query: 580 cttagtcttacccctgggagatccgagcatatcaccttgaattacttccatttccctttt 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 cttagtcttacccctgggagatccgagcatatcaccttgaattacttccatttccctttt 487
Query: 640 ccagggagaaggtagaaaaatttccaaatatcttagttgggtttgaaattca 691
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ccagggagaaggtagaaaaatttccaaatatcttagttgggtttgaaattca 435
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1091
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1081
Effective search space: 736161
Effective search space used: 736161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no514_j13.g1 MSMg01no514_j13.g1 CHROMAT_FILE:
MSMg01no514_j13.g1 PHD_FILE: MSMg01no514_j13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:33 2005
(580 letters)
>mm_chr17_44152705_44153677
Length = 973
Score = 961 bits (497), Expect = 0.0
Identities = 558/581 (96%), Gaps = 9/581 (1%)
Strand = Plus / Plus
Query: 1 cttaaggaacaccttggagtggtagctggaggcacagtctttggggcttgcttatcctaa 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 cttaaggaacaccttggagtggtagctggaggcacaggctttggggcttgcttatcctaa 260
Query: 61 aacttgagagatgatgggggaaacccatcattccacctatggtgatggaggattcttggt 120
||||||||||||||| ||||||||||||||||||||||||||| | ||||| | ||||||
Sbjct: 261 aacttgagagatgat-ggggaaacccatcattccacctatggtaagggagggtgcttggt 319
Query: 121 ttgctactatcaggcaaagagaaaagaacaaagacagaaaagagggagaaagaatctatc 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttgctactatcacgcaaagagaaaagaacaaagacagaaaagagggagaaagaatctatc 379
Query: 181 gaatgcctgtaagcataaagaagcaaagcaagcccagagctttgactaggcactctgcat 240
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gaatgcctgcaagcataaagaagcaaagcaagcccagagctttgactaggcactctgcac 439
Query: 241 tgttgggatgggatgacatattggcatataagagagtggtcggacatgggagttaagcgt 300
|||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
Sbjct: 440 tgttgggatgggatgacatattggcatacaagagagtggtcagacatgggagttaagcat 499
Query: 301 gagaagagctgtggtgggttcagcctggggtgttgctgagtttggaaggaccaggggcat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gagaagagctgtggtgggttcagcctggggtgttgctgagtttggaaggaccaggggcat 559
Query: 361 gtacataaaaggctaggataaaatcttccagatgccagagagacaggaagctcttccctg 420
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 560 gtacataaaaggctaggataaaatcttccggatgccagagaaacaggaagctcttccctg 619
Query: 421 atgtcagggatctgttctaaaagacag-caggattcaagagttccaaaccccacggcatc 479
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 620 atgtcagggatctgttctaaaagac-gtcaggattcaagagttccaaaccccacggcatc 678
Query: 480 ctttttcctatggtcacagcgttagctctggggtcattttatagccatccatcttttact 539
||||||||| |||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 679 ctttttcctgtggtcacagc-----c-ctggggtcattttatagccatccatcttttact 732
Query: 540 tatactaacaacatttcttcccatcagtctagtagtctgat 580
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 tatactaacaacatttcttcccatcagtctagtagtctgat 773
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 973
Length adjustment: 10
Effective length of query: 570
Effective length of database: 963
Effective search space: 548910
Effective search space used: 548910
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
