Query= MSMg01no514_j17.b1 MSMg01no514_j17.b1 CHROMAT_FILE:
MSMg01no514_j17.b1 PHD_FILE: MSMg01no514_j17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:34 2005
(586 letters)
>mm_chr17_44021545_44022530
Length = 986
Score = 888 bits (459), Expect = 0.0
Identities = 475/481 (98%), Gaps = 2/481 (0%)
Strand = Plus / Minus
Query: 106 ctggagtaaccaaacctgggaagctcagattcaatgagatgccccttctctgtaaagtga 165
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 945 ctggagtaaccaaacctgggaggctcagattcaatgagatgccccttctctgtaaagtga 886
Query: 166 agagcaattgaagagggcacccagcattaacatgtggcctccacatgcctctatatggac 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885 agagcaattgaagagggcacccagcattaacatgtggcctccacatgcctctatatggac 826
Query: 226 atgagtgggcacacacacacacacacacatgcacacatacatgtaaactcttacacttga 285
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 atgagtggg--cacacacacacacacacatgcacacatacatgtaaactcttacacttga 768
Query: 286 acatgcatgcatactgcatacacttacatgcataaagagagcaagagaggtagagtgtat 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 acatgcatgcatactgcatacacttacatgcataaagagagcaagagaggtagagtgtat 708
Query: 346 ttggcagtcacagaagcatcagatctcgcagggagcttatgtcccacacacccatgtctc 405
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 ttggcagccacagaagcatcagatctcgcagggagcttatgtcccacacacccatgtctc 648
Query: 406 cctcctttcccactcataggacgtctgtcgcttgccaggaacagtgccactattttatta 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 cctcctttcccactcataggacgtctgtcgcttgccaggaacagtgccactattttatta 588
Query: 466 ttttccctcatagttcttacctatgtcttgttgttgtttgagtcaggaggaaacctaggg 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 ttttccctcatagttcttacctatgtcttgttgttgtttgagtcaggaggaaacctaggg 528
Query: 526 cttcatgcatgcacttggcaagtacgttaccatcgggatgcctttccacttccctttttc 585
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 527 cttcatgcatgcacttggcaagtacgctaccatcgggatgcctttccacttccccttttc 468
Query: 586 t 586
|
Sbjct: 467 t 467
Score = 64.5 bits (33), Expect = 2e-14
Identities = 37/39 (94%), Gaps = 2/39 (5%)
Strand = Plus / Minus
Query: 64 cttcaaagcagctggcattacgtacaggctggagtacca 102
||||||||||||||||||||||||||||||| ||||||
Sbjct: 243 cttcaaagcagctggcattacgtacaggctg--gtacca 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 2
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space: 562176
Effective search space used: 562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no514_j17.g1 MSMg01no514_j17.g1 CHROMAT_FILE:
MSMg01no514_j17.g1 PHD_FILE: MSMg01no514_j17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:34 2005
(586 letters)
>mm_chr17_43894222_43895207
Length = 986
Score = 1087 bits (562), Expect = 0.0
Identities = 580/586 (98%)
Strand = Plus / Plus
Query: 1 ctgcccttgggtctgaacaaacaaggaggtttcatgtttggaattccataatagcttttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgcccttgggtctgaacaaacaaggaggtttcatgtttggaattccataatagcttttc 260
Query: 61 ttgttttctcttgtggcttctgctgtaggaggaaggaaggaagaaaagcataaaacaact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgttttctcttgtggcttctgctgtaggaggaaggaaggaagaaaagcataaaacaact 320
Query: 121 tagtacttaaacgccgaaggtggacggagttttgtccgctgctcatcgtaggaaagctag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagtacttaaacgccgaaggtggacggagttttgtccgctgctcatcgtaggaaagctag 380
Query: 181 cagagatgtgcggataaatgggacagcagtcggctgaggggcgcaataggaagggaagag 240
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 cagagatgtgcggatgaatgggacagcagtcgactgaggggcgcaataggaagggaagag 440
Query: 241 aaagaagtggatgaggtcttgtcaggttctgcgatttcaaatggagctaagagcagttct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagaagtggatgaggtcttgtcaggttctgcgatttcaaatggagctaagagcagttct 500
Query: 301 cggagggggacccatgcaggagtaagacaggcatgtcctcaaaacaccacaatgagcaat 360
|| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 501 cgaagggggacccatgcaggagtaagacaggcatgtcctcaaagcaccacaacgagcaat 560
Query: 361 gggggaatgtgttcaaattctaacctactctcgggcctggttagtcttcctttctgcctg 420
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggggaaatgtgttcaaattctaacctactctcgggcctggttagtcttcctttctgcctg 620
Query: 421 tacagtaagaaaacttttcctttgacaccaacccccaaactgtttacatattaatcagta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tacagtaagaaaacttttcctttgacaccaacccccaaactgtttacatattaatcagta 680
Query: 481 tgaaaacaagcacattgctccagccaagctcaatttcctttgtgggaacagtttcccatg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgaaaacaagcacattgctccagccaagctcaatttcctttgtgggaacagtttcccatg 740
Query: 541 tcccatgcttcaccgtgtaggtacctaacagtcacaacacttgtct 586
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcccatgcttcaccgtgtaggtacctaacagtcacaacacttgtct 786
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space: 562176
Effective search space used: 562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
