Query= MSMg01no516_b02.b1 MSMg01no516_b02.b1 CHROMAT_FILE:
MSMg01no516_b02.b1 PHD_FILE: MSMg01no516_b02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:38 2005
(700 letters)
>mm_chr17_81016528_81017627
Length = 1100
Score = 1301 bits (673), Expect = 0.0
Identities = 691/697 (99%)
Strand = Plus / Minus
Query: 4 ggaattctctcatcaatgtgttaatttaaggcggtaaaagtcagtctgcaatgctaattg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 ggaattctctcatcaatgtgttaatttaaggcggtaaaagtcagtctgcaatgctaattg 841
Query: 64 aagatatagtagtgggaaagaaaagtcatcaacaaataccatttgtaattgtagtttaga 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 aagatatagtagtgggaaagaaaagtcatcaacaaataccatttgtaattgtagtttaga 781
Query: 124 ctgttatttctctcatcactgtgatctaaacaccagtaaggaaagaggtctgctgcggct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 ctgttatttctctcatcactgtgatctaaacaccagtaaggaaagaggtctgctgcggct 721
Query: 184 catagtttcagggaatatggttggtcacagtgagggagggcatggtggctcgagcagcct 243
||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 720 catagtttcagagaatatggttggtcatagtgagggagggcatggtggctggagcagcct 661
Query: 244 gttctgtatcagtaggggcttgtagctttgaattcccatgtggtactaaccaggaagcag 303
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 660 gttctgtatcagtaggggcttgcagctttgaattcccatgtggtactaaccaggaagcag 601
Query: 304 agatgggactggagagaagatccagttaggctacgtttagcagcctccaccacccaagca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 agatgggactggagagaagatccagttaggctacgtttagcagcctccaccacccaagca 541
Query: 364 tcatgtcccagagtctacagcctccccaggcctggtcagcagctaggggttaagtaaggc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 tcatgtcccagagtctacagcctccccaggcctggtcagcagctaggggttaagtaaggc 481
Query: 424 ccagcatgagccactggagaaaggtccacgtagaaccttgtcagtcagtgtcagtaactg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ccagcatgagccactggagaaaggtccacgtagaaccttgtcagtcagtgtcagtaactg 421
Query: 484 ctctcattagtgccttactgatttcatctgatgtgtttgaaataaaagaaatgctttgga 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ctctcattagtgccttactgatttcatctgatgtgtttgaaataaaagaaatgctttgga 361
Query: 544 tataactttttaaagagagaacacgtttacagaagttcattggaagggataaggctctgt 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tataactttttaaagagagaacacgtttacagaagttcattggaagggataaggctctgt 301
Query: 604 gtgaattggttctggttaataacgaaagacaatgcagtccaacagtagacagcagcacca 663
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 300 gtgaattggttctggttaataacgaaagacaatgcagcccaacagtagacagcagcacca 241
Query: 664 ggctggcaggcacacaacagagttcccgtgatccgca 700
|||||||||||||||| ||||||||||||||||||||
Sbjct: 240 ggctggcaggcacacagcagagttcccgtgatccgca 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1100
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1090
Effective search space: 752100
Effective search space used: 752100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no516_b02.g1 MSMg01no516_b02.g1 CHROMAT_FILE:
MSMg01no516_b02.g1 PHD_FILE: MSMg01no516_b02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:39 2005
(673 letters)
>mm_chr17_80839625_80840697
Length = 1073
Score = 1228 bits (635), Expect = 0.0
Identities = 666/679 (98%), Gaps = 9/679 (1%)
Strand = Plus / Plus
Query: 1 acccaagcactcagacaggagagctcttggttagtgtgggacagaccctagctaatgctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acccaagcactcagacaggagagctcttggttagtgtgggacagaccctagctaatgctt 260
Query: 61 aagtggtccatccccagctacaatctccctgagcctttagagtgggctgtgatgttgtaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagtggtccatccccagctacaatctccctgagcctttagagtgggctgtgatgttgtaa 320
Query: 121 tcttatatgtattcatctaggagtggcctctaggtccccatccccaagccacattttctg 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 tcttatatgtattcatctaggagtggcctttaggtccccatccccaagccacattttctg 380
Query: 181 aattcacagagtcagagtctcagtcaccgcaaacaagacctaagcagatggagccgaggt 240
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 aattcacagagtcagagtctcagtcaccacaaacaagacctaagcagatggagccgaggt 440
Query: 241 tgtatttcaaggcctgtggcaaatgctcacttcttctgataagcgaaaagggtttgaaaa 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtatttcaaggcttgtggcaaatgctcacttcttctgataagcgaaaagggtttgaaaa 500
Query: 301 agcaaatttacnaaaaaaaaaaaaaaaaaaaaaaaaaaaggaaaactgcagaacacttat 360
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agcaaatttac---aaaaaaaaaaaaaaaaaaaaaaaaaggaaaactgcagaacacttat 557
Query: 361 attctaatgaagtcagagcctatttcctttatcttcctacattacctaggtaacatatgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 attctaatgaagtcagagcctatttcctttatcttcctacattacctaggtaacatatgt 617
Query: 421 taggaagctaactcaaagttaggcaaagccccttagattaatcctatacttccatgtgat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 taggaagctaactcaaagttaggcaaagccccttagattaatcctatacttccatgtgat 677
Query: 481 ttaatattttctgag-aa--tt-tga--ttcattttaatcatatttcgattaacactata 534
||||||||||||||| || || | | ||||||||||||||||||||||||||||||||
Sbjct: 678 ttaatattttctgagtaagcttattaaattcattttaatcatatttcgattaacactata 737
Query: 535 aagtttaatacttctttccttcttcagtcctaactcaagttttgtatccgttgacaaatc 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 aagtttaatacttctttccttcttcagtcctaactcaagttttgtatccgttgacaaatc 797
Query: 595 tcttcctaatgtccccaacccacaggaaacattacattactctatttctttgtctgacac 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 tcttcctaatgtccccaacccacaggaaacattacattactctatttctttgtctgacac 857
Query: 655 tgttaggcaaataacagca 673
|||||||||||||||||||
Sbjct: 858 tgttaggcaaataacagca 876
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space: 704769
Effective search space used: 704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
