Query= MSMg01no516_h21.b1 MSMg01no516_h21.b1 CHROMAT_FILE:
MSMg01no516_h21.b1 PHD_FILE: MSMg01no516_h21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:14 2005
(535 letters)
>mm_chr17_81238502_81239436
Length = 935
Score = 663 bits (343), Expect = 0.0
Identities = 358/363 (98%)
Strand = Plus / Minus
Query: 173 cacgtctcaaaaacgacattcagaaaaccagcacatctatacaaaggcattcaacaacat 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 935 cacgtctcaaaaacgacattcagaaaaccagcacatctatacaaaggcattcaacaacat 876
Query: 233 tgatcgttgaggaaatactaattaaacccccaaggaggaaccactgcacacctgtcagaa 292
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 875 tgatcgttgaggaaatactaatcaaacccccaaggaggaaccactgcacacctgtcagaa 816
Query: 293 tggctattgtcagaaaaatcaaaagaaggatcataaaagccagaataccaggaagtctgc 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 tggctattgtcagaaaaatcaaaagaaggatcataaaagccagaataccaggaagtctgc 756
Query: 353 tgtgaaacagtctctcctagagctggctccataaaccagaccagaacaatgacagtatcc 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 tgtgaaacagtctctcctagagctggctccataaaccagaccagaacaatgacagtatcc 696
Query: 413 atgaaggtgcagaatggggaaaagtccccagagtcccacccaaccctagacacagagtat 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 atgaaggtgcagaatggggaaaagtccccagagtcccacccaaccctagacacagagtat 636
Query: 473 agtcaactaatgactgctgggagagggagagttatcttctcccagcaatgaacctttcat 532
|||||||||||||||||||||| ||||||||||| ||| ||||||| |||||||||||||
Sbjct: 635 agtcaactaatgactgctgggaaagggagagttagcttttcccagcgatgaacctttcat 576
Query: 533 tgg 535
|||
Sbjct: 575 tgg 573
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space: 485625
Effective search space used: 485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no516_h21.g1 MSMg01no516_h21.g1 CHROMAT_FILE:
MSMg01no516_h21.g1 PHD_FILE: MSMg01no516_h21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:14 2005
(539 letters)
>mm_chr17_81187521_81188465
Length = 945
Score = 965 bits (499), Expect = 0.0
Identities = 531/545 (97%), Gaps = 6/545 (1%)
Strand = Plus / Plus
Query: 1 aaggttgacctgggttgtagagggagacagtgtctcaaacaaacaaatacccactcccaa 60
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 aaggttgacctgggttgtagagggagacagtgtctcaaacaaatgaatacccactcccaa 260
Query: 61 caaaaccctgagctaagacctcaactcaggttaatcaaatcaagatctttggcaggtagg 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaaaccctgagctaagacctcaactcaggttaatcaaatcaagatctttggcaggtaga 320
Query: 121 gtgcaaaatattgtt------aaaaacaaaaacacaacagccaagccaactttcccaagt 174
||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 gtgcaaaatattgttaaaaacaaaaacaaaaacacaacaaccaagccaactttcccaagt 380
Query: 175 tctgcagtttgagagtgggatagaagtttggtccaattggaagatggtggaaccttcaaa 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgcagtttgagagtgggatagaagtttggtccaattggaagatggtggaaccttcaaa 440
Query: 235 tgatgaggcgccactgggaagtccttaggtgggtgggatccttgcctttaaagagattaa 294
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgatgaagcgccactgggaagtccttaggtgggtgggatccttgcctttaaagagattaa 500
Query: 295 gaacatctcctgagatccttgagctgtcaagagttctgtagcaggagccagccagccagc 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaacatctcctgagatccttgagctgtcaagagttctgtagcaggagccagccagccagc 560
Query: 355 tagaatccttcctgaaagtttggagatgtgaccttatttcttcttcctgtaaagtccttg 414
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 561 tagaatccttcctgaaagtttggagatgtgatcttatttcttcttcctgtaaagtccttg 620
Query: 415 tgctgtaaagctgtcccttttacacccttgagagaaacagaggcctaacctttcctctaa 474
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgctgtaaagctgtcccctctacacccttgagagaaacagaggcctaacctttcctctaa 680
Query: 475 ccttcaggactgtgaactaaatgagccctttaaaatttattttatttttatatttattta 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccttcaggactgtgaactaaatgagccctttaaaatttattttatttttatatttattta 740
Query: 535 ctttg 539
|||||
Sbjct: 741 ctttg 745
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 945
Length adjustment: 10
Effective length of query: 529
Effective length of database: 935
Effective search space: 494615
Effective search space used: 494615
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
