Query= MSMg01no516_l22.b1 MSMg01no516_l22.b1 CHROMAT_FILE:
MSMg01no516_l22.b1 PHD_FILE: MSMg01no516_l22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:36 2005
(536 letters)
>mm_chr17_62813521_62814456
Length = 936
Score = 971 bits (502), Expect = 0.0
Identities = 521/528 (98%), Gaps = 6/528 (1%)
Strand = Plus / Plus
Query: 4 ggaattctgtgctttcatgggccaccaaccaactgaaacttcctcctcttcctgatgtct 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgtgctttcatgggccaccaaccaactgaaacttcctcctcttcctgatgtct 263
Query: 64 gggcaggcatgattgcttaggaatcacaatgtgtttgtgtttcctaccataacctgtttt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gggcaggcatgattgcttaggaatcacaatgtgtttgtgtttcctaccataacctgtttt 323
Query: 124 acattggctaatgcctctgatgctccccatcccatacacacacacacacacacacacaca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 acattggctaatgcctctgatgctccccatcccatacacacacacacacacacacacaca 383
Query: 184 cacacacacacacacacacagaggagacacagagagagacagagacagaggggggggaac 243
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct: 384 cacacacacacacacaca--gaggagacacagagagagacagagacagaggggggg-aac 440
Query: 244 atgatttcaccctacacacattataaagttcaagagcgagaaagagttccctgtgctagc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgatttcaccctacacacattataaagttcaagagcgagaaagagttccctgtgctagc 500
Query: 304 ttgcagctctattctgaagacgctgaccaagggaaaaaaaatcaaaccctccattcaaag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgcagctctattctgaagacgctgaccaagggaaaaaaaatcaaaccctccattcaaag 560
Query: 364 ctctttccctactaatgggagagccaaagtctgccagtatcttgtggtagccccttcatg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctctttccctactaatgggagagccaaagtctgccagtatcttgtggtagccccttcatg 620
Query: 424 gtttgtctttggcagatcagtatcaaaccaaatagttataggccaagttggggttttt-t 482
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 621 gtttgtctttggcagatcagtatcaaaccaaatagttataggccaagttggg-tttttct 679
Query: 483 tt-tttctttttttctttctttcttttttttttttttttttttttttt 529
|| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttctttctttctttctttctttcttttttttttttttttttttttttt 727
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 92
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space: 487076
Effective search space used: 487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no516_l22.g1 MSMg01no516_l22.g1 CHROMAT_FILE:
MSMg01no516_l22.g1 PHD_FILE: MSMg01no516_l22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:36 2005
(644 letters)
>mm_chr17_62946341_62947384
Length = 1044
Score = 1212 bits (627), Expect = 0.0
Identities = 643/651 (98%), Gaps = 7/651 (1%)
Strand = Plus / Minus
Query: 1 cttaaattccctttccagggttctgttagtgtggacttggagttggtataacttgcgcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 cttaaattccctttccagggttctgttagtgtggacttggagttggtataacttgcgcac 770
Query: 61 ctttggttcactcttggttaccatgagttagagtgagcagcattctctgtggtttcagcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 ctttggttcactcttggttaccatgagttagagtgagcagcattctctgtggtttcagcc 710
Query: 121 cttccctagtccctgtcagtattcaacaaagcaatttaatctcccgggtaagtgacagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 cttccctagtccctgtcagtattcaacaaagcaatttaatctcccgggtaagtgacagtt 650
Query: 181 ctgccccttgtaactggcatggaatcttttttttttttttaacttgacttgagaggtgaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 ctgccccttgtaactggcatggaatcttttttttttttttaacttgacttgagaggtgaa 590
Query: 241 ctatcaggagagtctcaagaaatcacactagcaagtgcactcattagtaagctgaattgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 ctatcaggagagtctcaagaaatcacactagcaagtgcactcattagtaagctgaattgg 530
Query: 301 tttcagctggattgtttgactgtcctcatctcttagactagcttccccctccctctctct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 tttcagctggattgtttgactgtcctcatctcttagactagcttccccctccctctctct 470
Query: 361 tccttttatcatcgatcctgcttacgagacttattacccactctgtggactgagaacatc 420
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 469 tccttttatcatcgatcctgctcacgagacttattacccactctgtggactgagaacatc 410
Query: 421 agcctctgttactgggctattcaaaacagacacacataccatactaccctggcccaattc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 agcctctgttactgggctattcaaaacagacacacataccatactaccctggcccaattc 350
Query: 481 tgacagtaccaggtagagggaggaagaaagtgggttctcccgctgttggccaaacccttc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 tgacagtaccaggtagagggaggaagaaagtgggttctcccgctgttggccaaacccttc 290
Query: 541 taagatgataggaagaaatagaagacacacaagaagaaagcaaaggtaagtgacataaac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 taagatgataggaagaaatagaagacacacaagaagaaagcaaaggtaagtgacataaac 230
Query: 601 acagcttgttagctacacagcaggcaaac--at--aa---tcttctggaag 644
||||||||||||||||||||||||||||| || || |||||||||||
Sbjct: 229 acagcttgttagctacacagcaggcaaacttatggaagtttcttctggaag 179
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space: 655556
Effective search space used: 655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
