Query= MSMg01no517_e23.b1 MSMg01no517_e23.b1 CHROMAT_FILE:
MSMg01no517_e23.b1 PHD_FILE: MSMg01no517_e23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:20 2005
(588 letters)
>mm_chr17_10107566_10108554
Length = 989
Score = 901 bits (466), Expect = 0.0
Identities = 561/606 (92%), Gaps = 28/606 (4%)
Strand = Plus / Minus
Query: 5 gaattcctccatcc-taacttacccattggacatgggtgacaagaatattatccctttcc 63
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 gaattcctccatccaaaaattacccattggacatgggtgacaagaatattatccctttcc 575
Query: 64 taacactgttctttcaacttaccatcaccaatctcctttatgtgagtctcagcttaaaca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 taacactgttctttcaacttaccatcaccaatctcctttatgtgagtctcagcttaaaca 515
Query: 124 gaggatgacaagcagggttaaatttcattagccacacagaggggtattttctgagcatcg 183
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gaggatgacaagtagggttaaatttcattagccacacagaggggtattttctgagcatcg 455
Query: 184 atgggcatccagaaagcctagggataacacttcagcatcttataagcaagcagcctaagg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 atgggcatccagaaagcctagggataacacttcagcatcttataagcaagcagcctaagg 395
Query: 244 taacttaaaatctgtcactgatgggtgatggtatgtatactatgtaaaaatattttataa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 taacttaaaatctgtcactgatgggtgatggtatgtatactatgtaaaaatattttataa 335
Query: 304 tgtaataaatgtacataatactgaacagtccccatggtggctagtaagtcaagatggtaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtaataaatgtacataatactgaacagtccccatggtggctagtaagtcaagatggtaa 275
Query: 364 tatttgttaccactgctttgagagcagtgatccatttagagggaaatatttctttctctt 423
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 274 tatttgttaccactgctttgagagcaatgatccatttagagggaaatatttctttctctt 215
Query: 424 ctcttctcttctcttcccttcccttcccttcccttcccttcccttcccttcccctctc-- 481
|||||||||||||||| |||| |||| |||| |||| |||| |||| |||| | ||||
Sbjct: 214 ctcttctcttctcttctcttctcttctcttctcttctcttctcttctcttctcttctctt 155
Query: 482 c-cttccc--ctct----------------cccttcccctcanccttcccctcacccttc 522
| |||| | |||| |||||||| || ||||||| || |||||
Sbjct: 154 ctcttctcttctcttctcttctcttctcttcccttcccttc--ccttcccttc--ccttc 99
Query: 523 ccctcacccttcccctctcccttcccctctcccttcccctctcccttcccctctcccttc 582
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98 ccttc--ccttcccctctcccttcccctctcccttcccctctcccttcccctctcccttc 41
Query: 583 ccctct 588
||||||
Sbjct: 40 ccctct 35
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 70
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 989
Length adjustment: 10
Effective length of query: 578
Effective length of database: 979
Effective search space: 565862
Effective search space used: 565862
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no517_e23.g1 MSMg01no517_e23.g1 CHROMAT_FILE:
MSMg01no517_e23.g1 PHD_FILE: MSMg01no517_e23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:21 2005
(609 letters)
>mm_chr17_9928747_9929755
Length = 1009
Score = 1170 bits (605), Expect = 0.0
Identities = 608/609 (99%)
Strand = Plus / Plus
Query: 1 cataataatgtcacatgcccttggagtgagctatttggaaagtgtcccttttagtgattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cataataatgtcacatgcccttggagtgagctatttggaaagtgtcccttttagtgattt 260
Query: 61 gtgagaccttagaatagtattattcaacttagaattgaatgtaattattcattcatggtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgagaccttagaatagtattattcaacttagaattgaatgtaattattcattcatggtt 320
Query: 121 taagacctgctatggtgaaaaattataattaacttgggttgaagtctatattgttttaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taagacctgctatggtgaaaaattataattaacttgggttgaagtctatattgttttaaa 380
Query: 181 gttattcttgggatgtgaattcagaatatcaatttttcaatgtggttcttgctaagtgcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttattcttgggatgtgaattcagaatatcaatttttcaatgtggttcttgctaagtgcc 440
Query: 241 ctttaaaggacggagcaattaagaacggtccaggcaaggctgatgacttgagggaggcag 300
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 441 ctttaaaggacggagcaattaagaacggtccaagcaaggctgatgacttgagggaggcag 500
Query: 301 ggatacttccagaggatcccagggcacagagttaagaggttttcaagtcaaggtaaaact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggatacttccagaggatcccagggcacagagttaagaggttttcaagtcaaggtaaaact 560
Query: 361 tcctgcaattaaggctgtggggagactgagtgatgggtcgttctggcacccagagtgaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcctgcaattaaggctgtggggagactgagtgatgggtcgttctggcacccagagtgaga 620
Query: 421 ttttacatgtagaaataaaaacatattcatttatcttggatttttctatccaagaatgta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttttacatgtagaaataaaaacatattcatttatcttggatttttctatccaagaatgta 680
Query: 481 tcatttagcatttatttctaattgtatttttatgcaatgcctttatgggaacagaacata 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcatttagcatttatttctaattgtatttttatgcaatgcctttatgggaacagaacata 740
Query: 541 agcatgatgtatatgtgcttatatatacatacatatgattatataatatatgattataca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agcatgatgtatatgtgcttatatatacatacatatgattatataatatatgattataca 800
Query: 601 tatgattat 609
|||||||||
Sbjct: 801 tatgattat 809
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space: 598401
Effective search space used: 598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
