TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCCAGTACTCTGTTTTCCTCTAGTCTGAGGACCCTACTCCAGATGCA
AATAAAGCCACAGAGAGTTCTGATGGGGCTCCTCTTCATAGCATCATGGG
CCTCTAACTCCCTTCAATACCCTTAACCAACATATCCTTATCCTTCCTTT
GTGCCCATTTTCAGTACCAACTCAAAAGCATTCCCAGTTAAGTATAAACT
GTGGATGGTAGACAACTTTTGTTTTCCATGGGTTACTGTAACTTACACTA
TGCAAGATGAGCCCAAATAAACTCCTGCTTCTCTAGCTGGTCTTGGTTAT
GGTGTTTTATCAGAGCAATAGAAAAGTAACTAAACAGGATGTGATGGAGA
CCAGCACAGAAGTGGTGTAGGAGGCAGGAGAGAGCAAGATTTGAAGGAGC
AACAACATGAGAAAGCAAGAAGAGTAGTGAGAAGCAATGTCCAAGCACCC
TGATGTCTGGTTCAACAGGTCACCTACATCCCAGACCCAAGGTCTCTGAT
CCCACCTCCAATGGGATCGTTCTTTATTCATTTGCTTTGCAATGATATTC
TTGCATGGTTTTGCAGAACATCTTCCAGTGGGCAGAAGTTATCTGTCCCT
GGCAAGCCTTGAAACTCTGCAATCAAAACTGGGGTTGGCTAGGGCCAGGC
AAATTAAATCTAGTGTCCAAGAGAG

CAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTGTTAAGCTCTGCACCCCATTTTTTA
ATGGGGTTATTTGATTTTTTGGAGTCCACCTTCTTGAGTTCTTTATATAT
ATTGGATATAATCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCA
ATCTGTTGGTGGCCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTACAGA
AGCTTTGCAATTTTATGAGGTCCCATTTGTCAATTCTTGATCTTACAGCA
CAAGCCATTGCTGTCTATTCAGGAATTTTCCCCCTGAGCCCATATCTTTG
AGGCTTTCCCCCACTTTCTCCTCTATAAGTTTCACTGTCTCTGGTTTTAT
GTGGAGTTCCTTGATCCACTTAGATTTGACCTTAGTACAAGGAGATAGAT
TGCAAGCTTGTACAACCACTCTGGAAATAAATCTGGCGGTTCCTCAGAAA
ATTGGACATAGTACTACCAGAGGATCCCGCAATACCTCTCCTGGGCATAT
ATCCAGAAGATGTTCCAACTGGTAAGAAGAACACATGCTCCACTATGTTC
ATAGCAGCCTTATTTATAATAGCCAGAAGTTGGAAAGAACCCAGATGCCC
CTCAACAGAGGAATGGATACAGAAAATGTGACACATTTACATAATGGAGT
ACTACTCAGCTATTAAN

Query= MSMg01no517_f03.b1 MSMg01no517_f03.b1 CHROMAT_FILE:
MSMg01no517_f03.b1 PHD_FILE: MSMg01no517_f03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:21 2005
         (606 letters)



>mm_chr17_44370177_44371182
          Length = 1006

 Score = 1077 bits (557), Expect = 0.0
 Identities = 593/609 (97%), Gaps = 7/609 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctccagtactctgttttcctctagtctgaggaccctactccagatgcaaataaag 64
           ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 198 gaattctccagtactctgtcttcctctagtctgaggaccctactccagatgcaagtaaag 257

                                                                       
Query: 65  ccacagagagttctgatggggctcctcttcatagcatcatgggcctctaactcccttcaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ccacagagagttctgatggggctcctcttcatagcatcatgggcctctaactcccttcaa 317

                                                                       
Query: 125 tacccttaaccaacatatccttatccttcctttgtgcccattttcagtaccaactcaaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tacccttaaccaacatatccttatccttcctttgtgcccattttcagtaccaactcaaaa 377

                                                                       
Query: 185 gcattcccagttaagtataaactgtggatggtagacaacttttgttttccatgggttact 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gcattcccagttaagtataaactgtggatggtagacaacttttgttttccatgggttact 437

                                                                       
Query: 245 gtaacttacactatgcaagatgagcccaaataaactcctgcttctctagctggtcttggt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gtaacttacactatgcaagatgagcccaaataaactcctgcttctctagctggtcttggt 497

                                                                       
Query: 305 tatggtgttttatcagagcaatagaaaagtaactaaacaggatgtgatggagaccagcac 364
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 498 tatggtgttttatcagagcaatagaaaagtaactaaacaggaagtgatggagaccagcac 557

                                                                       
Query: 365 agaagtggtgtaggaggcaggagagagcaagatttgaaggagcaacaacatgagaaa--- 421
           |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||   
Sbjct: 558 agaagtggagtaggaggcaggagagagtaagatttgaaggagcaacaacatgagaaaaca 617

                                                                       
Query: 422 ----gcaagaagagtagtgagaagcaatgtccaagcaccctgatgtctggttcaacaggt 477
               ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 618 agaagcaagaagagtagtgagaagcaatgtccaagcaccctgatgtctggtccaactggt 677

                                                                       
Query: 478 cacctacatcccagacccaaggtctctgatcccacctccaatgggatcgttctttattca 537
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 678 cacctacatcccagacccaaggtctctgatcccacctccaatgggatcattctttattca 737

                                                                       
Query: 538 tttgctttgcaatgatattcttgcatggttttgcagaacatcttccagtgggcagaagtt 597
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 738 tttgctttgcaatgatattcttgcatggttttgcagaacatctcccagtgggcagaagtt 797

                    
Query: 598 atctgtccc 606
           |||||||||
Sbjct: 798 atctgtccc 806


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space:   593616
Effective search space used:   593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)