Query= MSMg01no518_c19.b1 MSMg01no518_c19.b1 CHROMAT_FILE:
MSMg01no518_c19.b1 PHD_FILE: MSMg01no518_c19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:30 2005
(709 letters)
>mm_chr17_65745670_65746772
Length = 1103
Score = 1228 bits (635), Expect = 0.0
Identities = 688/713 (96%), Gaps = 13/713 (1%)
Strand = Plus / Minus
Query: 4 ggaattctccatcttctcatattcctgtgggcctc-------actttgtatggactgtct 56
||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 945 ggaattctccatcttctcatattcctgtgggcctcactcctgactttgtatggactgtct 886
Query: 57 ggggtgtaacaggaatgacagtcagcactcaggacaactttaatagagtcggagctatgt 116
||||||||||||||||||||||||||||||||||| |||||||| | ||||||||
Sbjct: 885 ggggtgtaacaggaatgacagtcagcactcaggac------aatagagttgaagctatgt 832
Query: 117 gccacccacggaaccatagtctttcctttcctgcctgtttctaggaccttttcgattacg 176
||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 gcctctcacggacccatagtctttcctttcctgcctgtttctaggaccttttcgattaca 772
Query: 177 tctactgttctctgatgtgagaacagtgtctattttccatgccaagtcacatctcaaatg 236
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 771 tctactgttctctgatgtgagaacagtgtctattttccatgctacgtcacatctcaaatg 712
Query: 237 gacgacaccatagccccactagccaattcacgtttgtgtattctattattagaattctgt 296
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 gacgacaccatagccccacaagccaattcacgtttgtgtattctattattagaattctgt 652
Query: 297 ttttatgcatgtttccagggccaatcatttgatgtaagatgttcctctgttttcaacatc 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 ttttatgcatgtttccagggccaatcatttgatgtaagatgttcctctgttttcaacatc 592
Query: 357 ttagtaaatatctatagataattacatttgaaattcataagtcaatcaggcaaagcaaat 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 ttagtaaatatctatagataattacatttgaaattcataagtcaatcaggcaaagcaaat 532
Query: 417 acagcagataccagatgacgcaagcaaagcctcgtacccaggcagtgagcagacagttgg 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 acagcagataccagatgacgcaagcaaagcctcgtacccaggcagtgagcagacagttgg 472
Query: 477 gacagtcacaagctcaacggctacacatgcatttttgacacttaggttgtagaagggtct 536
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 471 gacagtcacaagctcaacggctacacatgcatttttgacacttaggtcgtagaagggtct 412
Query: 537 cacttatttgaaccaggaaaatgatggggaggcaagttttcttcagagaaacctctaact 596
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 411 cacttatttgaaccaggaaaatgatggggaggcaaattttcttcagagaaacctctaact 352
Query: 597 tagaaatttctgaaagcagctatattaatttagtgtaaatttaatttagtattcaattgg 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 tagaaatttctgaaagcagctatattaatttagtgtaaatttaatttagtattcaattgg 292
Query: 657 tatttaaaaatatgtcataaggataacacacatgatgaagaccaaaggacagt 709
||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 291 tatttaaaaatatgtcataagtataacacacatgatgaagaccaaaggacagt 239
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 709
Length of database: 1103
Length adjustment: 10
Effective length of query: 699
Effective length of database: 1093
Effective search space: 764007
Effective search space used: 764007
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no518_c19.g1 MSMg01no518_c19.g1 CHROMAT_FILE:
MSMg01no518_c19.g1 PHD_FILE: MSMg01no518_c19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:30 2005
(630 letters)
>mm_chr17_65564100_65565129
Length = 1030
Score = 1172 bits (606), Expect = 0.0
Identities = 624/630 (99%)
Strand = Plus / Plus
Query: 1 accaagaaagctaggctggccagctagccttctctgaagatattgccagtctttgcttca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accaagaaagctaggctggccagctagccttctctgaagatattgccagtctttgcttca 260
Query: 61 ccaatgccggattacaagtgcataccaccacatctggattctttttattggggttctggg 120
||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||
Sbjct: 261 ccaatgccggattacaagtgcataccagcacatctggtttcttttcattggggttctggg 320
Query: 121 agttgggtttggtcttcactcacataaggcgagcactttaaccactgagttagccgttgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agttgggtttggtcttcactcacataaggcgagcactttaaccactgagttagccgttgc 380
Query: 181 cctaggtttctatcagtctataattttctaataattggttatactgtttcagataccggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctaggtttctatcagtctataattttctaataattggttatactgtttcagataccggg 440
Query: 241 agataacagaggccactccccttggtggagttaatgaattagtttgggataccagttact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agataacagaggccactccccttggtggagttaatgaattagtttgggataccagttact 500
Query: 301 gtatcaactttgtttcatttactgacttaactctttactttccaaagtagcagcattaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtatcaactttgtttcatttactgacttaactctttactttccaaagtagcagcattaaa 560
Query: 361 cataagagaaaattagacatatagattaggaagcaaaaatcttaataaaggaatactgct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cataagagaaaattagacatatagattaggaagcaaaaatcttaataaaggaatactgct 620
Query: 421 gctcttccaaaggccctgagttcaattcccatggtgacttctaagcatctataatggtgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctcttccaaaggccctgagttcaattcccatggtgacttctaagcatctataatggtgt 680
Query: 481 tctcttctggcttgcaggcatatatgcagacagaacactatatacataataaataaatta 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cctcttctggcttgcaggcatatatgcagacagaacactatatacataataaataaatta 740
Query: 541 attttgaaaaaaacaccctggaatgaaatccttggggtggcgcatgcctttaatcccagc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 attttgaaaaaaacaccctggaatgaaatccttggggtggcgcatgcctttaatcccagc 800
Query: 601 actcggggacaggaagatttctgagtttga 630
||||||||||||| |||||||||| |||||
Sbjct: 801 actcggggacaggcagatttctgaatttga 830
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space: 632400
Effective search space used: 632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
