NNAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTGGTCTGATATTCACTGACTGCTAGAGGGTTCACAGAA
GGTCTTACCATTCTGTCTCTTATTAGCACACACTGTCCCATCATTATATA
CAGATACAGGGATCAAAGTTTTACACACACACACACACACACACACACAC
ACACACACACACACACACACACACACACACACACCAGATACTACTGTCTG
GACATTACTGTAAACTCACTGACTTTGTACCTTATTTCCTCCCTTGCCCT
TAGGAGTTGAACTCAGACGTTACTTATGATTGAGCAGCACAGTCATTTTG
CTATTGTAGTGAGATATATGCTGGCTGGTACATCAAGCCATACCTTCTCC
ATATAAGGTATTGTTTTAGTAAAGCAACCAACAAGCAAATAAAAACAGCT
TATACTGTGAGCTAATTTCAAATGTCTACTACGAAATAAATTTACAAGAC
ATCAGATTTTGAAAAACAAAATTTAGGTTTTTAAGACAATATTTGAAAAT
CGAAAAGTTATGAATATAATGCATCTGTCATGTAATAGATTTTCATCTAA
GAAAATAAGGGGAATGAAATTTTCTACTGTGGTGTGTTAGACTATTAACT
CAGCACCAAGATGATCTCTGGTCTATACTAATATTACAACACATTTGGAT
AAAATATCATATTGAAAAATAGACATGGGCATATTACGAAATAGCGAGTG
TTAAAATCTTAA

NNNAACAAGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAAT
GGCAGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAA
TGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCT
AAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAG
AGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCT
GGAAATCCGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAG
GATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGG
TAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAG
CCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAG
AAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAA
TGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCC
TGAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTG
ATAAGTGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGACACAA
TTTCCTAAACACATGAAACTCCAGAAAAATGAAGACTGAAGTGTGGACAC
TATGGC

Query= MSMg01no522_a12.b1 MSMg01no522_a12.b1 CHROMAT_FILE:
MSMg01no522_a12.b1 PHD_FILE: MSMg01no522_a12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:32 2005
         (552 letters)



>mm_chr17_50958211_50959160
          Length = 950

 Score = 1000 bits (517), Expect = 0.0
 Identities = 540/549 (98%), Gaps = 4/549 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctttggtctgatattcactgactgctagagggttcacagaaggtcttaccattc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 204 ggaattctttggtctgatattcactgactgctagagggttcacagaaggtctta--attc 261

                                                                       
Query: 64  tgtctcttattagcacacactgtcccatcattatatacagatacagggatcaaagtttta 123
           ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 262 tgtctcttattagcacacactgtcccatcattaaatacagatacaggtatcaaagtttta 321

                                                                       
Query: 124 cacacacacacacacacacacacacacacacacacacacacacacacacacacacacaca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cacacacacacacacacacacacacacacacacacacacacacacacacacacacacaca 381

                                                                       
Query: 184 ccagatactactgtctggacattactgtaaactcactgactttgtaccttatttcctccc 243
           |  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 c--gatactcctgtctggacattactgtaaactcactgactttgtaccttatttcctccc 439

                                                                       
Query: 244 ttgcccttaggagttgaactcagacgttacttatgattgagcagcacagtcattttgcta 303
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 440 ttgcccttaggagttgaactcagacgttactgatgattgagcagcacagtcattttgcta 499

                                                                       
Query: 304 ttgtagtgagatatatgctggctggtacatcaagccataccttctccatataaggtattg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttgtagtgagatatatgctggctggtacatcaagccataccttctccatataaggtattg 559

                                                                       
Query: 364 ttttagtaaagcaaccaacaagcaaataaaaacagcttatactgtgagctaatttcaaat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttttagtaaagcaaccaacaagcaaataaaaacagcttatactgtgagctaatttcaaat 619

                                                                       
Query: 424 gtctactacgaaataaatttacaagacatcagattttgaaaaacaaaatttaggttttta 483
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gtctactacaaaataaatttacaagacatcagattttgaaaaacaaaatttaggttttta 679

                                                                       
Query: 484 agacaatatttgaaaatcgaaaagttatgaatataatgcatctgtcatgtaatagatttt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 agacaatatttgaaaatcgaaaagttatgaatataatgcatctgtcatgtaatagatttt 739

                    
Query: 544 catctaaga 552
           |||||||||
Sbjct: 740 catctaaga 748


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 76
Number of extensions: 36
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 950
Length adjustment: 10
Effective length of query: 542
Effective length of database: 940
Effective search space:   509480
Effective search space used:   509480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)