Query= MSMg01no522_c06.b1 MSMg01no522_c06.b1 CHROMAT_FILE:
MSMg01no522_c06.b1 PHD_FILE: MSMg01no522_c06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:40 2005
(271 letters)
>mm_chr17_93599822_93600490
Length = 669
Score = 478 bits (247), Expect = e-139
Identities = 262/267 (98%), Gaps = 2/267 (0%)
Strand = Plus / Plus
Query: 5 gaattccttggggtgttggtgttgccgacacacgngttaaggaaaagctantttgagaga 64
||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 205 gaattccttggggtgggggtgttgccgacacacg-gttaaggaaaagcta-tttgagaga 262
Query: 65 cggaataacgcaagaaagagaaagcaaaggagggagaagaaacggatgcgagggagggag 124
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 263 cggaataacgcaagaaagagaaagcaatggagggagaagaaacggatgcgagggagggag 322
Query: 125 agaatgccagcaggcaggaggggttgggaggacagcctagctcaactggggatgcagaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agaatgccagcaggcaggaggggttgggaggacagcctagctcaactggggatgcagaaa 382
Query: 185 acctggcttttgtcttggcttctgattctaatagtgaaacgctgcccaggttccctgtcg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 acctggcttttgtcttggcttctgattctaatagtgaaacgctgcccaggttccctgtcg 442
Query: 245 cagctccagaaaccctcacacgtattc 271
|||||||||||||||||||||||||||
Sbjct: 443 cagctccagaaaccctcacacgtattc 469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 669
Length adjustment: 9
Effective length of query: 262
Effective length of database: 660
Effective search space: 172920
Effective search space used: 172920
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no522_c06.g1 MSMg01no522_c06.g1 CHROMAT_FILE:
MSMg01no522_c06.g1 PHD_FILE: MSMg01no522_c06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:40 2005
(485 letters)
>mm_chr17_93780480_93781368
Length = 889
Score = 857 bits (443), Expect = 0.0
Identities = 471/489 (96%), Gaps = 15/489 (3%)
Strand = Plus / Minus
Query: 1 ttccatttggggaagacaaagacttctgaagacagatttttggtaacactggctggcaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ttccatttggggaagacaaagacttctgaagacagatttttggtaacactggctggcaca 681
Query: 61 gcaatatgacagcacctaatgccacaattctatgcagcaaaaaaatggttaaagggtaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gcaatatgacagcacctaatgccacaattctatgcagcaaaaaaatggttaaagggtaag 621
Query: 121 ttttgtaattcagattttaaaagagagatagcataggagctaatgtgacagtgttttgta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttttgtaattcagattttaaaagagagatagcataggagctaatgtgacagtgttttgta 561
Query: 181 tg----aaaaaaaataaaagaaaaatagatggggtaccagaatcctggcacatactccca 236
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgaaaaaaaaaaaataaaagaaaaatagatggggtaccagaatcctggcacatactccca 501
Query: 237 atagggaggaaacaaatgcaaaataaagagtacatggctaactaacatcaatgcctgtcc 296
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 500 ataaggaggaaacaaatgcaaaataaagagtacatggctaactaacatcaatgcttgtcc 441
Query: 297 ttatccccttgcacccaaccccacaggttgaaagctgggcactagaaacatcagcatctt 356
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttatccctttgcacccaaccccacaggttgaaagctgggcactagaaacatcagcatctt 381
Query: 357 ctctcctgagagtgagtgagttcttttgtttgcttttgtttttgttttgtttggctcccc 416
||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 380 ctctcctgagagtgagtgagttcttttgtttgc-----------ttttgtttggctcccc 332
Query: 417 cttggtgaggacaagctggggaatgactctgtggtgaacatggttgccaagtgagagcaa 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 cttggtgaggacaagctggggaatgactctgtggtgaacatggttgccaagtgagagcaa 272
Query: 477 acccctcag 485
|||||||||
Sbjct: 271 acccctcag 263
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 889
Length adjustment: 10
Effective length of query: 475
Effective length of database: 879
Effective search space: 417525
Effective search space used: 417525
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
