BAC Information

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BAC

Clone NameMSMg01-522K04
Chromosome17 (Build37)
Map Location 36,126,809 - 36,127,112
singlet/doubletsinglet
Overlap genenone
Upstream geneVars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1
Downstream geneH2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-522K04.T7 (MSMg01no522_k04.b1)MSMg01-522K04.TJ (MSMg01no522_k04.g1)
ACCAG593146AG593147
length715802
length of high quality
(start - end)
105 (56 - 160)305 (76 - 380)
definitionCHROMAT_FILE: MSMg01no522_k04.b1 PHD_FILE: MSMg01no522_k04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:17 2005CHROMAT_FILE: MSMg01no522_k04.g1 PHD_FILE: MSMg01no522_k04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTCTTTTTTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCTGCAAACATATCTTATCCATAATAATGTGTCTAAG
CTACGGAGGACTTTCACCTCTACCACACCTGATTAAGTCCATTCTCAGAA
CAGTTTTATNGGACACTNGATAGAGGCACTAAAAGAAAGAAAAATGCCTG
ACATTTCTAGTTTGTTTCAGACCCCCAAGACAAAGTGAGCATCTCCCAGC
CTGAAGTGATGTCACCTGAGTGCTGGGCCTGGCTTCTACCTGCTGACATC
CCCTGACTTGGAGTTGAATGGACAAGATCTGATTCAGGACTTGGAACTTT
TTGGAAACCAGCCCCGGCGGGGAATAAAAACCTTCCCCAAAATGGGGCCC
CTCTTTGGGGGGGGGGCCTTTCTGGGAAGGGGGACCCCAAAAAATCCCCC
CTGTTTCCCGGGGGGGGACCCAATTAAAAAGGGGTTTCCCCTAGAAGAGC
CCCCCTCCCCCTCCGAAAAAGGGGGTGAAAAAAGAAGGTGGGGGGGGGGG
GGAAAAAAACTTGGGGTGCCCTCGGGAAAAAAAACGTGGAACACTCCTTT
TTATAAAACCCCCCGTAGAAAAAGGCGCCGGGGTTTGTTATATAAGGAGA
AAGAAAAAAGACCCCCCCCTTTTTTTTTTTTTCCCGGCGCGGTTTTTTTT
TTTAAAAAAACACCG
AGCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTAAAATGTTCACTCCCTTCAATGG
CTCCAAGAAGGACATGATGAGTCCTGTAACCTGCACTGCCATACGGAGTT
AGAACCACACCATGTGACCGTGCATGAAGGTTATGTACCCAGAATGTTAG
AAAGGAGGAAAAGGCGCAACTAAGAAAAATCCAGTCTCTAATCTAGGGCT
CTTTGGCCTCACAAACAACACACAGTTGGCCGTTGTGTCTGCCCCTTGAT
GCTTGTGTTCCCTGTCCTCTGTTGACTCAAGGTTCCCCATGGGTGTTTGG
GTGAGTTGGGTTGGGGTGGAGTTGACATGTTTAGTCGTATGGACTTGATT
TGGATAATTCTCGAACCATTATTATTATAAATTTTTGCATTTCTGATACA
TGATATGTCATTTATTTTTTTTTATTTCCTCTTCTTCCCTTAGCCTTGAC
ACCTTTATTTTTTCTTTTGAACCTGATTTATTCTACTTTTCTTTGATTCT
ATATTATTATCCTTCTGCTTATTTACCCTTAGTTTTTTATAATTATCATT
TATATATTGTGTTCCTTTACCCCCCAACCCATTTCTTATTTTTTAACAGT
TTCTCTTTTTTTTTTTTTATTTTTTCCCTCTCCTCTCTGCAGCCATTTTA
CTTTTTTTTTGCGCTAAATATTTTCTCCTATCTATTAAGTACTCGGGTCT
TATTTATGATGATTATTTTTTCTCATTTAATAATATAGTATTTAATGTTT
TN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no522_k04.g1 MSMg01no522_k04.g1 CHROMAT_FILE:
MSMg01no522_k04.g1 PHD_FILE: MSMg01no522_k04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:17 2005
         (305 letters)



>mm_chr17_36126609_36127313
          Length = 705

 Score =  588 bits (304), Expect = e-172
 Identities = 304/304 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaaaatgttcactcccttcaatggctccaagaaggacatgatgagtcctgtaacctgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaaaatgttcactcccttcaatggctccaagaaggacatgatgagtcctgtaacctgca 260

                                                                       
Query: 61  ctgccatacggagttagaaccacaccatgtgaccgtgcatgaaggttatgtacccagaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgccatacggagttagaaccacaccatgtgaccgtgcatgaaggttatgtacccagaat 320

                                                                       
Query: 121 gttagaaaggaggaaaaggcgcaactaagaaaaatccagtctctaatctagggctctttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttagaaaggaggaaaaggcgcaactaagaaaaatccagtctctaatctagggctctttg 380

                                                                       
Query: 181 gcctcacaaacaacacacagttggccgttgtgtctgccccttgatgcttgtgttccctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcctcacaaacaacacacagttggccgttgtgtctgccccttgatgcttgtgttccctgt 440

                                                                       
Query: 241 cctctgttgactcaaggttccccatgggtgtttgggtgagttgggttggggtggagttga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctctgttgactcaaggttccccatgggtgtttgggtgagttgggttggggtggagttga 500

               
Query: 301 catg 304
           ||||
Sbjct: 501 catg 504


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space:   206016
Effective search space used:   206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)