BAC Information

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BAC

Clone NameMSMg01-523O11
Chromosome17 (Build37)
Map Location 67,893,946 - 67,894,420
singlet/doubletsinglet
Overlap genenone
Upstream gene9130404H23Rik, Ptprm
Downstream geneLrrc30, Lama1, Arhgap28, D930040M24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-523O11.T7 (MSMg01no523_o11.b1)MSMg01-523O11.TJ (MSMg01no523_o11.g1)
ACCAG594108AG594109
length740743
length of high quality
(start - end)
487 (75 - 561)464 (77 - 540)
definitionCHROMAT_FILE: MSMg01no523_o11.b1 PHD_FILE: MSMg01no523_o11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:59 2005CHROMAT_FILE: MSMg01no523_o11.g1 PHD_FILE: MSMg01no523_o11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAACCTAXXXXXXXXXXXXXXXXXXXXXXXXXXAATCAAAGTAGGACCGC
GGAATTCTGCTTCCCCCCAACTCTTAAGATCTGTCTTCCTGCTCCTCACC
CATGCCTCCCAGGCTCTGGGGTTCTAAATGCTTGCTCCAAATTAAATATA
TAGAGCTAAAGGGTCAACGCTAGCATCCGCATGTGACTGAGAATATGTGG
CTTGTGGCTTTTGTCTTTTCGGGTTGGGGTTTCTTCTCCAGCCTGATGGT
TTCCAGGTCCTTCCATTTACCTGCAAAATTCATACTTTTGTGTTTATTTA
TAGTTTAATAAAATTCCAATGTTACAATCTACCCACAAGTTGATGAACAT
GTATGTCTTAGCTATCATGATTAGAGCAGTAATCAGTTAAACGTGTCTCT
GCTGTACAGAGTCCTTCACCTGCTATTCCCAGGAGTGGTTTGGCTGGGTC
CTGTGGTAAATATCTTTCTAGCTTGAATAACTGCCACACTAATTTCCACG
TGAGCTGTACCAGATTCCACTCCCACGGACAGTACACGAGACCCTCATTT
CCCCTCACATCTTTGCCAGCAATTTCGGCCTATTGATTGTTAGATTGTTT
GTTTGTCTTTTCTAACATTATCTATTCTGATTGGTACAAGATGAAATCTC
AAACCAGTTTTCATTTTAACTTCCCTGACGCCCAAAGATAGTGAATAATT
TAAAAAAGGGTTTTGAGACAGGATCTTTTCTAAGTAGCCC
NACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTCTGGTCTACAGAGTGAGTTCC
AGGACAGCCAGGGCTACACAGAGAAACGCTGTCTAAAAAAACAAACAAAC
AAACAAAAAAAAAAACATGAACTCAGTGTCTCCAAGGGATTTTTTTTTTC
TCTTTTAAGGCATGAGGTAGATGCTGAGATGACTCTCATCCAGTATCTGA
CCATGCTTCGACAGGTTTCTCCAGTGAGATTTTATTTTTCTGCATAAACT
ATGTTTATTACTTTCTATAAGCTTTGTTGTCAGATGGCTGCCGCTGATGT
GCCACTCAAAGCGGTCTGAGAAACTGTTCCTGCCCCCTCATCTTGTCATG
TGACAGAACAGGAGGGAGACACTGAGAAAGGTTAGTAAAGCAAGGCTGAG
CTCAGCGTTGTTCATGTTAAGGAAAGGCCATAGTTTACAGAAGCCGGGCG
ATCTCATTTGACATGACCCCAGTAGTCCTGACAGGCACCCAGGGAGAGTT
ACGGCTGAAGGAGCTCTGGAAGTCAACCAGGGGTAAGTTAATATATACCA
GAGTATGTGTAGAAAACCTACCAGGACAATCCCAGTGCGACAGCCATAAT
ACCCAGCTTCTGGATCTGGATATTTGACAAATTAAAATGACAGTTCTTAG
AGAAAGAAAATAAGCCTTTTCTTCTTACTTTGACCAGAAATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no523_o11.g1 MSMg01no523_o11.g1 CHROMAT_FILE:
MSMg01no523_o11.g1 PHD_FILE: MSMg01no523_o11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:59 2005
         (464 letters)



>mm_chr17_67893677_67894543
          Length = 867

 Score =  843 bits (436), Expect = 0.0
 Identities = 461/476 (96%), Gaps = 13/476 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtctggtctacagagtgagttccaggacagccagggctacacagagaaacgctgtctaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 agtctggtctacagagtgagttccaggacagccagggctacacagagaaacgctgtctaa 685

                                                                       
Query: 61  aaaaacaaacaaacaaaca-------aaaaaaaaaacatgaactcagtgtctccaaggga 113
           |||||||||||||||||||       ||||||||||||||||||||||||||||||||||
Sbjct: 684 aaaaacaaacaaacaaacaaacaaacaaaaaaaaaacatgaactcagtgtctccaaggga 625

                                                                       
Query: 114 ttttttttttctcttttaaggcatgaggtagatgctgagatgactctcatccagtatctg 173
            ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 624 -tttttttttctcttttaaggcatgaggtatatgctgagatgactctcatccagtatctg 566

                                                                       
Query: 174 accatgcttcgacaggtttctccagtgagattttattttt-----ctgcataaactatgt 228
           |||||||||||||||||||||||||||||||||| |||||     |||||||||||||||
Sbjct: 565 accatgcttcgacaggtttctccagtgagattttttttttttttgctgcataaactatgt 506

                                                                       
Query: 229 ttattactttctataagctttgttgtcagatggctgccgctgatgtgccactcaaagcgg 288
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttattactttctataagctttgttgtcagatggctgccgctgatgtgccactcaaagcgg 446

                                                                       
Query: 289 tctgagaaactgttcctgccccctcatcttgtcatgtgacagaacaggagggagacactg 348
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctgagaaactgttcctgccccctcatcttgtcatgtgacagaacaggagggagacactg 386

                                                                       
Query: 349 agaaaggttagtaaagcaaggctgagctcagcgttgttcatgttaaggaaaggccatagt 408
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agaaaggttagtaaagcaaggctgagctcagcgttgttcatgttaaggaaaggccatagt 326

                                                                   
Query: 409 ttacagaagccgggcgatctcatttgacatgaccccagtagtcctgacaggcaccc 464
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttacagaagccgggcgatctcatttgacatgaccccagtagtcctgacaggcaccc 270


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 867
Length adjustment: 10
Effective length of query: 454
Effective length of database: 857
Effective search space:   389078
Effective search space used:   389078
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)