BAC Information

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BAC

Clone NameMSMg01-525M24
Chromosome17 (Build37)
Map Location 92,707,968 - 92,708,480
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043741, LOC100043742, EG640442
Downstream geneLOC627395, LOC676141, LOC668877, LOC100043746, LOC100043747, LOC100043748, LOC100043907, Adcyap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-525M24.T7 (MSMg01no525_m24.b1)MSMg01-525M24.TJ (MSMg01no525_m24.g1)
ACCAG595558AG595559
length780785
length of high quality
(start - end)
578 (32 - 609)513 (66 - 578)
definitionCHROMAT_FILE: MSMg01no525_m24.b1 PHD_FILE: MSMg01no525_m24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:33 2005CHROMAT_FILE: MSMg01no525_m24.g1 PHD_FILE: MSMg01no525_m24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGCGGCCGCTAAACGACTCCTATATTTCAGAGGATCCGCGGAATTCACAA
GATATATAAACCCTTAGCCAGACTAAACAGAGGGCACAGAGACAGTATGC
AAATTAAGAAAATCAGAAATGAAAAGGGAGTCATAACAAGAGAAATGGAG
GAAATTCAAAATCATCAACTCCTACTACAAAAGCCTATATTTACCTAAAC
AGGAAAATCTGGATGATTTGGACAATTTTCTAGACAGACGCAAAATACCA
AATTTAGATAAGAATCAGATAAATGATCTAATCAGTCCTATAACACCTAA
AGAAATAGAAGCAGTCATCAAAAGTCTTCCAACCAAAAAAAAAAAAAAAA
AAAAAAGCTCCAGAACCAGATGGGTTTAATGCAGAATTCTACCAGACCTT
CAAAGAAGACCTAATACCAAGGAGGAATACTACCCAATTTGTTCTGTGAA
ACTACAATTACTCTGATACCAACACCACACAAAGACTCAACAAAGAAAGA
GAATTTCAAACCAATTCCCCTTATGAATATCAATGCAAAAATACTCAATA
AAATTATTTTTAAAATAATCAAAGAACACAGCCAAACCATTATTCACCAT
GATCAAGGAGGCTTCATCACAGGGATACAGGTATGGTTCAATATATAGAA
ATTCATCAATGTAATCAACTGCATAAATAAACTCAAAGAAAGAAAAACAC
ATAATCCTTTCATTAGATGACGATAAAGCATTTGACAATATTCACATCTT
TTCTATTTAACATCTTGGAGAGGTCAGGAT
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXACCATAACCTGCTTTGACCGCTACTCCTCCAGCTT
GCTTTTTCCTGTTTTGGAGCAGGTGAGAAAATGACAAACATTAACATGTA
GAAAGAAGGTATTGGGACATAGAAATGACAATATTAAATATCTTATCACA
ACAGGGCACTGCCTTCACATCAATTACCAACTTAAAATACAGAGACATAT
CTAAGTAGTCTTTCGATTCAATATGTGAGGGCAAAGGCCATTCCCACAAA
CATACACGGATAGTAAATATGTCAAAATGTGTTCAACATTATTAGTTTTA
TGAATGCAGATTAAAAAGTTCTACTATTCCATACTCATAAAATTTATGAA
AATTCTAAGAACTAAAATTTTTAGCCAATCTATTTTCATGTAAAAGTTTT
GAGCTATTTTCCCTCAGGGAGTCAAAAGTAAACATTTATCTGCTTATAAA
CAATGAAGTTGCCGGGCAGTAGTGGGGCATGCCTTTAATCCCAGTACTTG
GGAGGCAGAAGTAGGCGGATTTCTGAGTTCGAGGACAGCCTGGTCTACAG
AGTGAGTTCCAGGACAGCCTATACAGAGAAACCCTGTCTCGAANNAAACA
AGAAACCAAAACTAAGAAACAAAAAAAAAAAAGAAGTTGATTTCAGTTCT
TTGTTACCATGAATAAACATTCACTACCAGTTGTTGGTGCCAATATCTTT
ATGGTAAGAATGGTGTCTTCTAGGTTGATCAGTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no525_m24.g1 MSMg01no525_m24.g1 CHROMAT_FILE:
MSMg01no525_m24.g1 PHD_FILE: MSMg01no525_m24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:33 2005
         (513 letters)



>mm_chr17_92707836_92708748
          Length = 913

 Score =  984 bits (509), Expect = 0.0
 Identities = 512/513 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   accataacctgctttgaccgctactcctccagcttgctttttcctgttttggagcaggtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 accataacctgctttgaccgctactcctccagcttgctttttcctgttttggagcaggtg 586

                                                                       
Query: 61  agaaaatgacaaacattaacatgtagaaagaaggtattgggacatagaaatgacaatatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 agaaaatgacaaacattaacatgtagaaagaaggtattgggacatagaaatgacaatatt 526

                                                                       
Query: 121 aaatatcttatcacaacagggcactgccttcacatcaattaccaacttaaaatacagaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 aaatatcttatcacaacagggcactgccttcacatcaattaccaacttaaaatacagaga 466

                                                                       
Query: 181 catatctaagtagtctttcgattcaatatgtgagggcaaaggccattcccacaaacatac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 catatctaagtagtctttcgattcaatatgtgagggcaaaggccattcccacaaacatac 406

                                                                       
Query: 241 acggatagtaaatatgtcaaaatgtgttcaacattattagttttatgaatgcagattaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 acggatagtaaatatgtcaaaatgtgttcaacattattagttttatgaatgcagattaaa 346

                                                                       
Query: 301 aagttctactattccatactcataaaatttatgaaaattctaagaactaaaatttttagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 aagttctactattccatactcataaaatttatgaaaattctaagaactaaaatttttagc 286

                                                                       
Query: 361 caatctattttcatgtaaaagttttgagctattttccctcagggagtcaaaagtaaacat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 caatctattttcatgtaaaagttttgagctattttccctcagggagtcaaaagtaaacat 226

                                                                       
Query: 421 ttatctgcttataaacaatgaagttgccgggcagtagtggggcatgcctttaatcccagt 480
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 225 ttatctgcttataaacaatgaagttgccgggcagtagtggggcacgcctttaatcccagt 166

                                            
Query: 481 acttgggaggcagaagtaggcggatttctgagt 513
           |||||||||||||||||||||||||||||||||
Sbjct: 165 acttgggaggcagaagtaggcggatttctgagt 133


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)