BAC Information

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BAC

Clone NameMSMg01-526B08
Chromosome17 (Build37)
Map Location 52,523,665 - 52,524,019
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043451, LOC100043452, Satb1, EG628919, LOC672987
Downstream geneEG328839, Kcnh8, LOC668506, EG629036, LOC668512
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526B08.T7 (MSMg01no526_b08.b1)MSMg01-526B08.TJ (MSMg01no526_b08.g1)
ACCAG595763AG595764
length743738
length of high quality
(start - end)
630 (33 - 662)355 (66 - 420)
definitionCHROMAT_FILE: MSMg01no526_b08.b1 PHD_FILE: MSMg01no526_b08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:54 2005CHROMAT_FILE: MSMg01no526_b08.g1 PHD_FILE: MSMg01no526_b08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCCGCGGAATTCTTTGTT
TAGCTCTGTACTCTATTTTTAATTGGGGTTATTTGATTTTCTGTACTCTA
GCTTCTTTAGTTCTTTGTATATATTGGATATTAGACTCCTATCTGATTCA
GGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATT
GACAGTTTCTTTTGCCTTACAGAAGCTCTGCAATTTTATGAGATCCCATT
TGTCCATTCTTGATCTTACAGCACAAGCCATTGCTGTTCTTTTCAGGAAT
TTTCCCTCTGTGCTCATATCTTCAAGGCTTTTCCCCTACTTCCTCCTCTA
TAAGTTTTAATGTCACTGGTTTTATGTGGAGTTCCTTGATCTACTTAGAC
TTGAGTTTTGTACAGGAGATAAGAATGGATCAATTCATATTCTTCCACAA
GCTAACCAACCGCCAGTTGAGCCAGCACCATTTGTTGAAAATGCTGTCCG
TTTTCCACTGTATGGTTTTAGGTCCATTGTCAAAGATCAAGTGACCATAG
GTGTGTGTGTTCATTTCTGGGTCTTCCATTCAATTCCTTTGATCTACCTG
CATGTCACTATACCAATACCAAGCAGTTTTTATCATTATTGTCCTGTAGT
ACAGCTTGAGGTCTGGGATGCTGATTTCCCCAGAAGTTCTTTTATTGTTG
AGAATAGTTTTTGCTATCCTGGGCTTTTTGTTATTCCAAATGA
TGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCTTAAGCATTTCTGATTGCTACTTTGAAGTTATTA
CCTTGTGCATCAACCACATTCATTTTCTTAGGCAACAAATGGTGGAAGTT
CTGGTTTTTGAAAGGGATGTGTTGCCTTGGTTGTAAATATTTTTGTTTTA
GGGGAGATGGGATCTAAGCATCTGGAGTTAGATTACTGATTTGTTAGGGC
AGATATTTGGATCTTTGTTTTTTGTTACTCTAACTTGTTAAGTTGTGGAA
CTGGTAAGTGAAACTTGGTTTCAGTTATAGGTTTCTGTGTGGTTCCAAAG
CCCATCAGAGGGTAGGATGGCTGATAGAATCCTGGTTGGCAAATAGGGGA
TGTGGCTCTCCTGATCCATAACTGAGGTACTGGATAAGGCTACACAGGAT
CCTAAAGACCAAGAAATGGGTGGTTGATAGTCAGGAAGGCAAGCTTGGGG
AAGGAGCATGGGAGGATACTCACTCTGGGGGATTTCTTACTGGAAGTCTG
GGGTCAAGCTTCCCCAGGGGTCCCTGAACTTATTGGGAAGGGGGAAGGGT
GGTTATCCTACAGGGGAAAAATAAAAGGTTTGGTCGGGAAAAAATTTTTT
CTTGGGGGAGAACTTCCTTTTCTAGAGATTCTCACGTTTCTATTTGGCCA
TTTTTGGAAATCCCTAGGGGAGCTTTCTCGGGTGAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_b08.g1 MSMg01no526_b08.g1 CHROMAT_FILE:
MSMg01no526_b08.g1 PHD_FILE: MSMg01no526_b08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:54 2005
         (355 letters)



>mm_chr17_52523465_52524219
          Length = 755

 Score =  687 bits (355), Expect = 0.0
 Identities = 355/355 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttaagcatttctgattgctactttgaagttattaccttgtgcatcaaccacattcattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttaagcatttctgattgctactttgaagttattaccttgtgcatcaaccacattcattt 260

                                                                       
Query: 61  tcttaggcaacaaatggtggaagttctggtttttgaaagggatgtgttgccttggttgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttaggcaacaaatggtggaagttctggtttttgaaagggatgtgttgccttggttgta 320

                                                                       
Query: 121 aatatttttgttttaggggagatgggatctaagcatctggagttagattactgatttgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatatttttgttttaggggagatgggatctaagcatctggagttagattactgatttgtt 380

                                                                       
Query: 181 agggcagatatttggatctttgttttttgttactctaacttgttaagttgtggaactggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agggcagatatttggatctttgttttttgttactctaacttgttaagttgtggaactggt 440

                                                                       
Query: 241 aagtgaaacttggtttcagttataggtttctgtgtggttccaaagcccatcagagggtag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagtgaaacttggtttcagttataggtttctgtgtggttccaaagcccatcagagggtag 500

                                                                  
Query: 301 gatggctgatagaatcctggttggcaaataggggatgtggctctcctgatccata 355
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatggctgatagaatcctggttggcaaataggggatgtggctctcctgatccata 555


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 755
Length adjustment: 9
Effective length of query: 346
Effective length of database: 746
Effective search space:   258116
Effective search space used:   258116
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)