BAC Information

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BAC

Clone NameMSMg01-527D15
Chromosome17 (Build37)
Map Location 37,086,153 - 37,256,938
singlet/doubletdoublet
Overlap genePpp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91, Olfr92, EG224763
Upstream geneLOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31
Downstream geneLOC667973, Olfr93, Olfr753-ps1, LOC630355, Ubd, Olfr94, Olfr95, Olfr96, Olfr97, Olfr754-ps1, Olfr98, H2-M3, Olfr755-ps1, Olfr99, Olfr756-ps1, Olfr101, Olfr102, Olfr103, Olfr104, GA_x5J8B7W5KGR-1115818-1115257, Olfr105, Olfr758-ps1, Olfr106, Olfr107, Olfr759-ps1, Olfr108, Olfr760-ps1, Olfr109, H2-M2, Olfr110, Olfr111, Olfr112, Olfr113, Olfr114, Olfr115, Olfr116, Olfr117, Olfr118, Olfr119, Scocp, Olfr120, Olfr1558-ps1, Olfr121, Olfr122, Olfr123, Olfr124, Olfr125, LOC672822, Olfr126, Olfr127, Olfr128, Ppia-ps17_697.1, Olfr761, Olfr1552-ps1, LOC100043265, Olfr129, Olfr130, Olfr131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-527D15.T7 (MSMg01no527_d15.b1)MSMg01-527D15.TJ (MSMg01no527_d15.g1)
ACCAG596630AG596631
length759770
length of high quality
(start - end)		703 (49 - 751)372 (79 - 450)
definitionCHROMAT_FILE: MSMg01no527_d15.b1 PHD_FILE: MSMg01no527_d15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:24 2005CHROMAT_FILE: MSMg01no527_d15.g1 PHD_FILE: MSMg01no527_d15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:24 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(37,256,280 - 37,256,938)(37,086,153 - 37,086,524)
sequence
TTGTTTTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTTTTCTGAATGTGTGTGTTTCTTCATCTGAAATCAAAGAG
AACATGCAGTAGTCATATCCAGATAATGCCACTGATGCAGAGGGCATTGG
GAAATTCAGGATGGCATTCCCATCCACAGTCCGCTGAGCCCTAACACCAG
TGCTGTCAAGGGGGCACAAGCCATCATTTGCTCTCACTTTTCATGGTGTG
AAGATCAACTGGAGGCTACGTTAACCCAGAAGCTCCTAATCATGGCCAAG
CCTCACCTGCCAAGAGATGAGAAGACTTTCACCTGACCACAGTAAGTCCT
GGGAGTTTTCTTCTGTAGTCCAGCAAAATCTCCCATGTCTTAAAGACTGG
GGACACATCTGGCACACGTTGTATTGTCCTGAACAAAGTATTTATCCTGT
CTGGGTTTTTCTTCATCTGCAGACAAAGGTAGAATGCAGTCATTGTACCT
GGGTTACACAGTGGACACAGAGTGCTTGAGTATCGAATAGGAAGTCAAAC
AGGGCTCAGGATCCAAGCCTGGCCTTCTTGGCTGTGTAATATTAGGCAAG
GTGTCTCAATATTCTGGTACTGCTCCTCTGTAAAGAGAGCATAATGCTAG
TGAATATTCTAGAAATGTAGCATAGGGCCAGATATACAGAAAGTTCTCAG
CAGATAGTGACAGTCACGATGTAGACATCAGCAAGAGCAGATATGGCAAA
CCACTCCCN

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGATCTGTATCCACCCTCCT
CTTCCTCTTCTCTATCACTCAGGAGACGGAAGAAGGGGGCAGGAGAACGG
AGGCAATGGGTGGAGTCCCCATGTCAGATGGATATATTTGGGGCAGGCAG
ACACATGAATGGTGAGAGGGATTTAGTGCTGCATAGGTCCTGGAGGGGGC
TGAGAGGGATCAGGAGGCTGTGGAGGAGTGGTTGGGGTGGGTGCTGGGGT
TGTAGGACNCCNTCCTTTGTTTTGACCCCGTACACAGTGCTTATGACTAC
AGCCTTCTTCTTCATCCTCATCACTCTCGGTGGAGCTCTCGCCAAAGGCC
CGAGGCTTCTCATAAATACAGCAGCCTGAATGGATAGAGAGAAAGCCAGC
TAATAATGATGAAGAGCAGTGCTCAGTCAGTTTCATTTCCACCAGATCTG
TGTGAAAACCTCTCCCTACTTTTCCGGAATCCAGCTGCCTTATCCTCTTC
CCCCAGGAATTTCAGATATAGTCTGGAAAAACCTTGACTCCCATTCTGCC
ATGTTTTGTTTCCGCCCCCACCCCCAAATCCAGGTTGTTGGTACCGTATA
CCTCTATTCCCCACCTAATTGTCCTTCCAACCCACAACTCGTTAGACCTT
CCCATCTTACTTGAAATGGTGTGTCTTGTTATTCTGGGACTTCCCCCTAC
CTCACTCTTACGTAGTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no527_d15.b1 MSMg01no527_d15.b1 CHROMAT_FILE:
MSMg01no527_d15.b1 PHD_FILE: MSMg01no527_d15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:24 2005
         (703 letters)



>mm_chr17_37256280_37257382
          Length = 1103

 Score = 1127 bits (583), Expect = 0.0
 Identities = 640/659 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttttttctgaatgtgtgtgtttcttcatctgaaatcaaagagaacatgcagtag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 659 gaattcttttttctgaatgtgtgtgtttcttcatctgaaatcaaagagagcatgcagtag 600

                                                                       
Query: 65  tcatatccagataatgccactgatgcagagggcattgggaaattcaggatggcattccca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 tcatatccagataatgccactgatgcagagggcattgggaaattcaggatggcattccca 540

                                                                       
Query: 125 tccacagtccgctgagccctaacaccagtgctgtcaagggggcacaagccatcatttgct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tccacagtccgctgagccctaacaccagtgctgtcaagggggcacaagccatcatttgct 480

                                                                       
Query: 185 ctcacttttcatggtgtgaagatcaactggaggctacgttaacccagaagctcctaatca 244
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 479 ctcacttttcatggtgtgaagatcaattggaggctacgttaacccagaagctcctaatca 420

                                                                       
Query: 245 tggccaagcctcacctgccaagagatgagaagactttcacctgaccacagtaagtcctgg 304
           ||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tggccaagcttcacccaccaagagatgagaagactttcacctgaccacagtaagtcctgg 360

                                                                       
Query: 305 gagttttcttctgtagtccagcaaaatctcccatgtcttaaagactggggacacatctgg 364
           || ||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||| |
Sbjct: 359 gatttttcttctgtagtccagcaaaatcccccatgtctgaaagagtggggacacatctag 300

                                                                       
Query: 365 cacacgttgtattgtcctgaacaaagtatttatcctgtctgggtttttcttcatctgcag 424
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct: 299 cacacgttgtattgtcctgaacaaagtatttaacctgtctgggtttttcttcatctgcac 240

                                                                       
Query: 425 acaaaggtagaatgcagtcattgtacctgggttacacagtggacacagagtgcttgagta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 239 acaaaggtagaatgcagtcattgtacctgggttacacagtggacacagaatgcttcagta 180

                                                                       
Query: 485 tcgaataggaagtcaaacagggctcaggatccaagcctggccttcttggctgtgtaatat 544
           ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 179 tcgaataggaagtcaaacagggctcagaatccaagcctgaccttcttggctgtgtaatat 120

                                                                       
Query: 545 taggcaaggtgtctcaatattctggtactgctcctctgtaaagagagcataatgctagtg 604
           | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 tgggcaaggtgtttcaatattctggtactgctcctctgtaaagagagcataatgctagtg 60

                                                                      
Query: 605 aatattctagaaatgtagcatagggccagatatacagaaagttctcagcagatagtgac 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 59  aatattctagaaatgtagcatagggccagatatacagaaagttctcagcaggtagtgac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 703
Length of database: 1103
Length adjustment: 10
Effective length of query: 693
Effective length of database: 1093
Effective search space:   757449
Effective search space used:   757449
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no527_d15.g1 MSMg01no527_d15.g1 CHROMAT_FILE:
MSMg01no527_d15.g1 PHD_FILE: MSMg01no527_d15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:24 2005
         (372 letters)



>mm_chr17_37085953_37086724
          Length = 772

 Score =  669 bits (346), Expect = 0.0
 Identities = 365/372 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggatctgtatccaccctcctcttcctcttctctatcactcaggagacggaagaagggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggatctgtatccaccctcctcttcctcttctctatcactcaggagacggaagaagggg 260

                                                                       
Query: 61  gcaggagaacggaggcaatgggtggagtccccatgtcagatggatatatttggggcaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaggagaacggaggcaatgggtggagtccccatgtcagatggatatatttggggcaggc 320

                                                                       
Query: 121 agacacatgaatggtgagagggatttagtgctgcataggtcctggagggggctgagaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 agacacatgaatggtgagagggatttagtgctgcataggtcctggagggggcttagaggg 380

                                                                       
Query: 181 atcaggaggctgtggaggagtggttggggtgggtgctggggttgtaggacnccntccttt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 381 atcaggaggctgtggaggagtggttggggtgggtgctggggttgtaggacgccgtccttt 440

                                                                       
Query: 241 gttttgaccccgtacacagtgcttatgactacagccttcttcttcatcctcatcactctc 300
           |   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcggtgaccccgtacacagtgcttatgactacagccttcttcttcatcctcatcactctc 500

                                                                       
Query: 301 ggtggagctctcgccaaaggcccgaggcttctcataaatacagcagcctgaatggataga 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 501 ggtggagctctcgccaaaggcccgaggcttctcataaatacagcagcctgaatggagaga 560

                       
Query: 361 gagaaagccagc 372
           ||||||||||||
Sbjct: 561 gagaaagccagc 572


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space:   276969
Effective search space used:   276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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