BAC Information

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BAC

Clone NameMSMg01-530H15
Chromosome17 (Build37)
Map Location 51,612,031 - 51,772,872
singlet/doubletdoublet
Overlap geneLOC100043451, LOC100043452
Upstream genePlcl2, EG654432, Tbc1d5
Downstream geneSatb1, EG628919, LOC672987, EG328839
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-530H15.T7 (MSMg01no530_h15.b1)MSMg01-530H15.TJ (MSMg01no530_h15.g1)
ACCAG599105AG599106
length751775
length of high quality
(start - end)		663 (50 - 712)586 (80 - 665)
definitionCHROMAT_FILE: MSMg01no530_h15.b1 PHD_FILE: MSMg01no530_h15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:06:48 2005CHROMAT_FILE: MSMg01no530_h15.g1 PHD_FILE: MSMg01no530_h15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:06:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,772,719 - 51,772,872)(51,612,031 - 51,612,616)
sequence
NNNAAAAATTAGTCCTCGTGTCACTAAACGACTCACTATTTTCAGAGGAT
CCGCGGAATTCTTTTTTCTTCTCTGAGCCCCATTTTTTAATGGGGTTATT
CGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTA
GTCCCCTATCCAATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGT
GGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAA
TTTTATGAGGTCCCATTTATTGATTCTCGATCTTACAGCACAAGCCATTG
CTGTTCTATTCAGGAATTTTCCCCCTGTACCCATATCTTCGAGGCTTTTC
CCTACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTTATGTGGAGTT
CCTTAATCCACTTAGATTTGACCTTAGTACAAGGAGATAGAAATGGATCA
AAAAAATATGGAACGCTTCACGAATTTGTGTGTCATCCTTGCGCAGGGGC
CATGTTAATCTTCTCTGTATTGTTCCAATTTTAGTATATGTGCTGCCGAA
GCGAGCACCCCAAAGCGGTTTTTGTTTGGATTGTTTTGCAGCATGGGAAT
CAAACCCACGTGCACAGGCTCCTGGGCACATCCCAGTGTTAACTCAAAAA
GTGGGGTGGAAGCTGGGCGGGTTAGCGCCTTCACTCTCCGCTGTGACAAA
GCACTTGACAAGAAACAACCTAATGGACTATTGACTTGGTTCAGTGATAG
T

NNNNCCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAGTTCCATGCTTTCTCCAC
TGAGTAGAAGGTGCATACCCTACTGTTGGAACACAGTGAGTATTTACACA
ATAGCAAACGTTTTCATAGTAATAGGTACTTGCTTTAAAATCTAGGAAGG
TGAAAAAGCATTACTCCAAATCTAAAACTTCATGTATTTTTATTACATTA
AGACTGCAGAAACTATGCAGTTTAGAGGCCTTGGTAGCTGTAGACTTAAG
ATCACTAAAGCAGTGCTCCCATGGTTGGCCGCTCAGGGTCATGGTCACAC
AGGGTCATGGTCATGCAGGGCTCTGACTCTAAGCTTTCCTAGGAATGTTT
CTACATAGAGAAAATTTGGCTTCTTTTGATCTAAAGATGTATTTCCTTAG
TTAGAATGTTTGTCTGGAATGTCTGGGTTTGATCCCCAGCACGGCATATA
TCAGACATGCTGGCTCATGCCTGTAATACCAGCTCTTGGGAGGTAGAAGC
AGCAGAAATAAAAAAAGGCTACCTAGAGAATTTGGGGCTAGCCGATGCTA
CATAAGACACCACCTTCAAATAAAAATCACTTGGTTTAGGTTAACTCAAA
TACTGAAGCATTTTGTTTAGATGTTTTTGTTGTTTGAAGAAAGAGTTTCC
AGCTGAGAGCAGAGTCAGTGGGACCCTCCCTGAAGAGCTGTCTTGACATT
CATAGTGAACAGAGAGCATCAGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no530_h15.b1 MSMg01no530_h15.b1 CHROMAT_FILE:
MSMg01no530_h15.b1 PHD_FILE: MSMg01no530_h15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:48 2005
         (663 letters)



>mm_chr17_51772010_51773072
          Length = 1063

 Score =  252 bits (130), Expect = 9e-71
 Identities = 148/154 (96%)
 Strand = Plus / Minus

                                                                       
Query: 510 cccaaagcggtttttgtttggattgttttgcagcatgggaatcaaacccacgtgcacagg 569
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 863 cccaaagcggtttttgtttggattgttttgcagcatgggaatcaaacccacgtacacagg 804

                                                                       
Query: 570 ctcctgggcacatcccagtgttaactcaaaaagtggggtggaagctgggcgggttagcgc 629
           ||||||||| ||||||||| ||||| | | ||||||||||||||||||||||||||||||
Sbjct: 803 ctcctgggcgcatcccagtattaacgcgataagtggggtggaagctgggcgggttagcgc 744

                                             
Query: 630 cttcactctccgctgtgacaaagcacttgacaag 663
           ||||||||||||||||||||||||||||||||||
Sbjct: 743 cttcactctccgctgtgacaaagcacttgacaag 710


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space:   687609
Effective search space used:   687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no530_h15.g1 MSMg01no530_h15.g1 CHROMAT_FILE:
MSMg01no530_h15.g1 PHD_FILE: MSMg01no530_h15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:49 2005
         (586 letters)



>mm_chr17_51611831_51612816
          Length = 986

 Score = 1064 bits (550), Expect = 0.0
 Identities = 577/586 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   taagttccatgctttctccactgagtagaaggtgcataccctactgttggaacacagtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taagttccatgctttctccactgagtagaaggtgcataccctactgttggaacacagtga 260

                                                                       
Query: 61  gtatttacacaatagcaaacgttttcatagtaataggtacttgctttaaaatctaggaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtatttacacaatagcaaacgttttcatagtaataggtacttgctttaaaatctaggaag 320

                                                                       
Query: 121 gtgaaaaagcattactccaaatctaaaacttcatgtatttttattacattaagactgcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgaaaaagcattactccaaatctaaaacttcatgtatttttattacattaagactgcag 380

                                                                       
Query: 181 aaactatgcagtttagaggccttggtagctgtagacttaagatcactaaagcagtgctcc 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 aaactatgcagtttagaggccttggtagccgtagacttaagatcactaaagcagtgctcc 440

                                                                       
Query: 241 catggttggccgctcagggtcatggtcacacagggtcatggtcatgcagggctctgactc 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 catggttggccgctcagggtcatggtcacacagggtcatggtcacgcagggctctgactc 500

                                                                       
Query: 301 taagctttcctaggaatgtttctacatagagaaaatttggcttcttttgatctaaagatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 501 taagctttcctaggaatgtttctacatagagaaaatttggcttcttttggtctaaagatg 560

                                                                       
Query: 361 tatttccttagttagaatgtttgtctggaatgtctgggtttgatccccagcacggcatat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatttccttagttagaatgtttgtctggaatgtctgggtttgatccccagcacggcatat 620

                                                                       
Query: 421 atcagacatgctggctcatgcctgtaataccagctcttgggaggtagaagcagcagaaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 621 atcagacatgctggctcatgcctgtaataccagctcttgggaggtagaagcaggagaaat 680

                                                                       
Query: 481 aaaaaaaggctacctagagaatttggggctagccgatgctacataagacaccaccttcaa 540
            |||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||
Sbjct: 681 taaaaaaggctacctagagaatttggggccagccgaggctacataagacaccatcttcaa 740

                                                         
Query: 541 ataaaaatcacttggtttaggttaactcaaatactgaagcattttg 586
           |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 741 ataaaaattacttggtttaggttaactcaaatactgaagcattttg 786


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space:   562176
Effective search space used:   562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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