NNNNAACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCACTGCCTTCTTATCTTACAGAATGAGGCATAAATGCCA
ATAGCAAATTAATATATTCTCTGTTACATTGAAGAGTATTGGGGTGCTTT
TGGTACCTGAAGAACAGGTTAGAAAACAACTGTTTATTTAGATATTATAA
ATTTGAAACTCAGACCTGGAACATTTGAATCCATTTCTGAATTTATGAAC
TTTTTATCAGAGGTATTTTGTTGTTGTTGTTGTTGTTTGTTTGTTTGTTT
GTTTGTTTTGTTTTTTGTAATTGAATATTTTATTTAGTTACATTTTATTC
CTTTTACTGGGTTTTCCTCTGCAAATGCCTATCTCATCTCCCTCCCACTA
CTTTTATGAGAGTGCTCCTCCACCCACCACCCACCCACCCACTCCCACAT
TACTGCCCTGGCATTCCCCTATACTGGGGTATTGAACCTTCACAGGACCA
AGAGCCTATTCTCCCATTGATGCTAGATAAGGCCATCCTCCACTACAATG
CAGATGGGGCCATGTGTACCCTTTGATTTTTGGTTTAGTGCCTGGGAGGT
CAGGGGGGTCTGGTTGGTTGATATTGTTGTTCTTTCTATGGNGTTGCAAA
CCCCTTCACCCATAATGAGTTCTGACTCCTGCTTCTGGTCTATCTGAATT
CAGCTACAGTGTAAATCTTTGGGATGGAGCAAGT

CAATTTCACTATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTTGTTCTATAC
ACTGTTTTTGATAGGTTTGTTTGGGTTTTTTGGTGGTTAGCTTCTCGAGT
TCTCATATACTTTGGATATTAGCCATCTATTGGATAGAGGGTTAGGGGTT
AGTGAAGTTTGTTTGGTTTTTGTTTTTGTTTTTGTTTTGTTTTTGGATTT
TTGTTTTTTTGTTTTTGTTTTTTGTTTTTTNTTTGTTTGTTTGTTTGTTT
TNTGTNTTGTTTGTTTTTGTTNGGTGTTNGGGGTTGTGTTTGGTTTTGTG
TTGGTGTTGGGTTTTGTTGTTTTGGGGTTGTGTTTTTNTTGTGTGTGTGT
TTGTNTGGTTTTTGGTTGTTTTGGGGNGNNNGGTTGTTGGGTTTTTTGTT
TTTTTTTGTTGGTGTTGTTNGTTGTGTTGTTTTTTNTGTTTGGTTTGTGT
TTTTGGTTTTTGGTTTTTTTTTGTGTTTTTTTTTTTTTTTTGTTTTTGGT
GNTTGTTTTTTTTTGGTTTTGTGGTGTTTGTTTTTTTTGTTGGTTTTTGT
GTTNTTTTTTTTTTGGTGGTGGTGTTGGGGTTGTGTTTGTTTGGTGTTTT
GTGTTGGTTTTTTGTGGGTTTTTGTTTTTCGTTTTTTTTTTTTTGGTTTT
CTTTTGTTGTTTTGTTTTTTTTTTTGTGTTGTGNGTGTTTTGTTTTTTTT
TGTTTTGCCGCG

Query= MSMg01no531_c21.b1 MSMg01no531_c21.b1 CHROMAT_FILE:
MSMg01no531_c21.b1 PHD_FILE: MSMg01no531_c21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:44 2005
         (650 letters)



>mm_chr17_93233169_93234217
          Length = 1049

 Score =  714 bits (369), Expect = 0.0
 Identities = 415/433 (95%), Gaps = 10/433 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactgccttcttatcttacagaatgaggcataaatgccaatagcaaattaatata 64
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 428 gaattcactgccttcttatcttacagcatgaggcataaatgccaatagcaaattaatata 369

                                                                       
Query: 65  ttctctgttacattgaagagtattggggtgcttttggtacctgaagaacaggttagaaaa 124
           ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||
Sbjct: 368 ttctctgttacattgaagagtgttggggtgcttttggtacctgaagaacagg-tagtaaa 310

                                                                       
Query: 125 caactgtttatttagatattataaatttgaaactcagacctggaacatttgaatccattt 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 309 caactgtttatttagatattataaatttgaaactcagacctggaacatttgaatccatgt 250

                                                                       
Query: 185 ctgaatttatgaactttttatcagaggtattttgttgttgttgttgttgtttgtttg-tt 243
           ||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||| ||
Sbjct: 249 ctgaatttatgaactttctatcagaggtattttgttgttgttgt--ttgtttgtttgttt 192

                                                                       
Query: 244 tgtttgtttgttttg---ttttttgtaattgaatattttatttagttacattttattcct 300
           ||||  |||||||||   |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 191 tgtt--tttgttttgtttttttttgtaattgaatattttatttatttacattttattcct 134

                                                                       
Query: 301 tttactgggttttcctctgcaaatg-cctatctcatctccctcccactacttttatgaga 359
           |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 133 tttactggtttttcctctgcaaatgccctatctcatctccctcccactacttttatgaga 74

                                                                       
Query: 360 gtgctcctccacccaccacccacccacccactcccacattactgccctggcattccccta 419
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 73  gtgctcctccacccaccacccacccacccactcccaccttactgccctggcattccccta 14

                        
Query: 420 tactggggtattg 432
           |||||||||||||
Sbjct: 13  tactggggtattg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1049
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1039
Effective search space:   664960
Effective search space used:   664960
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)