BAC Information

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BAC

Clone NameMSMg01-531O21
Chromosome17 (Build37)
Map Location 35,019,140 - 35,019,425
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042970, BC051226, Daxx, Zbtb22, Tapbp, Rgl2, H2-Ke2, Wdr46, B3galt4, Rps18, Vps52, EG630499, LOC100042989, AA388235, H2-K1, LOC654352, Ring1, H2-Ke6, Slc39a7, Rxrb, Col11a2, LOC672505, H2-Pa, H2-Oa, Brd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2, H2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142, EG632126, Btnl5, LOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1, Tnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2
Downstream geneZbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-531O21.T7 (MSMg01no531_o21.b1)MSMg01-531O21.TJ (MSMg01no531_o21.g1)
ACCAG600211AG600212
length759768
length of high quality
(start - end)
674 (42 - 715)315 (74 - 388)
definitionCHROMAT_FILE: MSMg01no531_o21.b1 PHD_FILE: MSMg01no531_o21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:43 2005CHROMAT_FILE: MSMg01no531_o21.g1 PHD_FILE: MSMg01no531_o21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGCGGA
ATTCAAAGGGTGTTACTTTAAATTTCCCTGGGGTGTTCTGTACTCGGAAC
AAGGCAAAGGGAAGGAGAGCTGTCCAATCTTTTTCGCCGGTCTCTAAAGC
CAATTTAGTTAAGGTTTCTTTTAATGTTCTAGTCATCCACTCTACCTGTC
CTGAACTCTGGGGTCTATAAGCACAATGTAACTTCCAACCGATCCCCAAT
TGTCTGGCTAACTCTTGACTTACTTGGGCAACAAAGGAGGGGCCATTGTC
CGATGAAAATACCTTAGGGATGCCAAATCTTGGGAAATTTTCCTCTAATA
TCTTCTTTGCCACGATATTGGCAGTCTCCTTCTTAGTGGGAAAGGCTTCG
ACCCACCCTGAAAAAGTGTCTATCAAAACTAATAGATATTTATTACCGTA
CTTGGTTGGATTAACTTCAGTAAAATTTACTTCTCAGTATGCCCCTGGCC
ACTCACCACTTAGCTGCCTTCTGGGGGCATTCTTGTGGTGCCGGGCATTG
GGGAGGGCACAGGCTTGGCATTTATTAACAATCTCCTGGGCAAGGTCGGG
CAATCTTATAACATAGTAGTTTGAGCTCTTAACAATTTCTTTGAGCGTCT
TAGTTCAAAGTGTGTGAGCCAGAGTAGATTGGCTCCATATTGTTGTCCTT
CTTTGGTGGGCAGGACCAAGTGACCATCTTGGGTCTTAGCCACTCCCTGG
GGAGTATAN
CCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTCCAACTTTCCAAATAACTGTTGGC
TTTCTTTTTATCTTATTTTCAGGGAAGGACCCAGGAAAGAATGTGAATCT
TCCTATACGCCAAGAAGTTCTAGGAACATCAGTTTCAAGTCCTCAGAAGC
TATTCTGGGGAAGACCCAGTGGACCCCAATGCATGTGGCAAACTCCAAAA
AAAGACGTGAAACAAAATAAATAAAACGTTTTGCAGGGCTTGTGTGCTTA
ATGCAAGCCACACAAGGCCAAATATGCTTGCTTCAGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGGNGNGNGNGTGTGTG
TGTGTGTGTGTGTGTGGGNGTGTTTGGGGGTGTGTGNGNGTGNGGGGGGG
GTGTGTGTGTTTTTGGTGTTTGGGTTGGGTTGTTGTTGTGTTGTTGTGTG
TGTTTTGTTTTGTGGTTTTTTTTGTGGGTTTTTTTTTTTGTGTTTTTTTT
TTTTTTTGTGTTTTGGGGGTTTGTTTTTTTNTTGTTTGGGGTTTGTTTTT
TTTGTGTGTTTGTGGGTTTGTTTTTGGGGGTTTTGGTGTTGTGGTTGTTT
TGGTGGGGTTTTGTTTTGTTTTGTTGGGTNTTTTTTTTTCGGTGTTTTTT
TTNGTTTTTGTTTTTTTGGTTGCTTTTTTTTGTGGTTTTGGGTTTTTTGT
TTTTTTTTTTTTTGTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no531_o21.g1 MSMg01no531_o21.g1 CHROMAT_FILE:
MSMg01no531_o21.g1 PHD_FILE: MSMg01no531_o21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:43 2005
         (315 letters)



>mm_chr17_35018964_35019678
          Length = 715

 Score =  553 bits (286), Expect = e-162
 Identities = 286/286 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttccaactttccaaataactgttggctttctttttatcttattttcagggaaggaccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tttccaactttccaaataactgttggctttctttttatcttattttcagggaaggaccca 403

                                                                       
Query: 61  ggaaagaatgtgaatcttcctatacgccaagaagttctaggaacatcagtttcaagtcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 ggaaagaatgtgaatcttcctatacgccaagaagttctaggaacatcagtttcaagtcct 343

                                                                       
Query: 121 cagaagctattctggggaagacccagtggaccccaatgcatgtggcaaactccaaaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 cagaagctattctggggaagacccagtggaccccaatgcatgtggcaaactccaaaaaaa 283

                                                                       
Query: 181 gacgtgaaacaaaataaataaaacgttttgcagggcttgtgtgcttaatgcaagccacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gacgtgaaacaaaataaataaaacgttttgcagggcttgtgtgcttaatgcaagccacac 223

                                                         
Query: 241 aaggccaaatatgcttgcttcagtgtgtgtgtgtgtgtgtgtgtgt 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 aaggccaaatatgcttgcttcagtgtgtgtgtgtgtgtgtgtgtgt 177


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)