BAC Information

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BAC

Clone NameMSMg01-532D12
Chromosome17 (Build37)
Map Location 12,777,189 - 12,898,914
singlet/doubletdoublet
Overlap geneSlc22a2, Slc22a1, Igf2r
Upstream genePark2, Agpat4, Tdgf1-ps2, Map3k4, 4732491K20Rik, LOC625753, Plg, Slc22a3, LOC100041192
Downstream geneAir, EG635617, Mas1, Mrgprh, Pnldc1, Mrpl18, Tcp1, Acat3, Acat2, Wtap, Sod2, Gpr31c, Tcp10c, Ttll2, Unc93a, Smok2a, Smok2b, LOC667359, LOC100041352, LOC667372, LOC667384, Smok4a, Tcte2, Mllt4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-532D12.T7 (MSMg01no532_d12.b1)MSMg01-532D12.TJ (MSMg01no532_d12.g1)
ACCAG600431AG600432
length742755
length of high quality
(start - end)		442 (53 - 494)635 (83 - 717)
definitionCHROMAT_FILE: MSMg01no532_d12.b1 PHD_FILE: MSMg01no532_d12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:05 2005CHROMAT_FILE: MSMg01no532_d12.g1 PHD_FILE: MSMg01no532_d12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(12,898,492 - 12,898,914)(12,777,189 - 12,777,823)
sequence
NNNGGGCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCATTCTGATTTCAAGAGAGGTAAGATCTGATCCCTGGCC
TAAGCTTGTCATGCCACACCAGTCAATGGTGCTGGGACAGTCCTTGCACT
GGCTCCCCTTTGTGATTACCCCAGGATGGCTATGAGGCCTCTTGCTGCCC
TTGCTGTCCTAAGTGTGAGACCCTCCTGACTGGTGGCTTTCTTGTCCCAC
AGGCACAGCATTCATCATCCGTTTTATTTGCAACGATGACATTTACCCAG
GAGCCCCCAAATTCCTGCATCAGGACATTGACTCCACACGAGGGATCCGG
AACACTTACTTTGAGTTTGAAACTGCATTGGCTTGTACTCCTTCTCTAGT
GGATTGTCAAGTGACTGGTGAGGCCTAGGAGTTGGTAGGCTGGGTTTCAG
TGAGGGGGTAGTGTGTGTGTGTGTGTGTGNTGGGTGGGTGNNNNNNNNNN
NNNNNNNNNNNNNNNTTNNNNNNNNNNNNNNNTTNNNNTTNNTTTTTTNT
TTNNTTTTTTTTNTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTT
TTTNTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTNTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTNTTTNNTTTTTTTTTTTT
TNTTTTTTTTTTTTTTTNTTTNTTTTTTTTTTTTTTTTTTTT

NGGGCGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACCTTTTCCAGAAACAA
ACATTTTTCCTCTTAGCTCTGCTCTCCGGTGCCTTCACCCCCATCTATGT
GGGCATCGTTTTCCTGGGCTTCACCCCCAACCACCACTGCCGGAGTCCTG
GAGTGGCCGAGCTGAGCCAGCGGTGTGGCTGGAGCCCAGCAGAGGAGCTA
AACTACACCGTGCCGGGCCTGGAGTCTGCGGGTGAGGTCTCCTTCCTCAG
CCAGTGCATGAGGTATGAGGTGGACTGGAACCAGAGCACCCTTGACTGTG
TGGACCCACTGTCCAGCCTGGCTGCCAACAGGAGCCACTTGCCACTGAGC
CCCTGCGAGCATGGCTGGGTGTACGACACTCCCGGCTCCTCCATCGTCAC
TGAGGTAAGTGAGCTCTGGAATTAGGATGCCAAAGAAGCAAATAACCGAG
TCTGTCTTAAGAAAGAACGAGGAAATGCTTGGTTCTTAACACTTGTCCAG
ACGTGCTTTTTTGGACCCAATACGCCTTATAAAATCCTAGCTTCCTGGTT
AAAAACACGCAGCCTTTCACTTGCCTGAGGTAGTCAGGGAGAACCCTGCT
GGCGCTGGCGGGCATGAGGCTGGTATGTCGGGACTCAGCCATGAGCAGCA
AGCAAGCACACATATTGGGGTACCCAAAATGATGCCAGATGTGGGCATGC
TTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no532_d12.b1 MSMg01no532_d12.b1 CHROMAT_FILE:
MSMg01no532_d12.b1 PHD_FILE: MSMg01no532_d12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:05 2005
         (442 letters)



>mm_chr17_12898288_12899129
          Length = 842

 Score =  795 bits (411), Expect = 0.0
 Identities = 420/423 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattctgatttcaagagaggtaagatctgatccctggcctaagcttgtcatgcca 64
           ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gaattcattctgataggaagagaggtaagatctgatccctggcctaagcttgtcatgcca 568

                                                                       
Query: 65  caccagtcaatggtgctgggacagtccttgcactggctcccctttgtgattaccccagga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 caccagtcaatggtgctgggacagtccttgcactggctcccctttgtgattaccccagga 508

                                                                       
Query: 125 tggctatgaggcctcttgctgcccttgctgtcctaagtgtgagaccctcctgactggtgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tggctatgaggcctcttgctgcccttgctgtcctaagtgtgagaccctcctgactggtgg 448

                                                                       
Query: 185 ctttcttgtcccacaggcacagcattcatcatccgttttatttgcaacgatgacatttac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ctttcttgtcccacaggcacagcattcatcatccgttttatttgcaacgatgacatttac 388

                                                                       
Query: 245 ccaggagcccccaaattcctgcatcaggacattgactccacacgagggatccggaacact 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ccaggagcccccaaattcctgcatcaggacattgactccacacgagggatccggaacact 328

                                                                       
Query: 305 tactttgagtttgaaactgcattggcttgtactccttctctagtggattgtcaagtgact 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tactttgagtttgaaactgcattggcttgtactccttctctagtggattgtcaagtgact 268

                                                                       
Query: 365 ggtgaggcctaggagttggtaggctgggtttcagtgagggggtagtgtgtgtgtgtgtgt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ggtgaggcctaggagttggtaggctgggtttcagtgagggggtagtgtgtgtgtgtgtgt 208

              
Query: 425 gtg 427
           |||
Sbjct: 207 gtg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no532_d12.g1 MSMg01no532_d12.g1 CHROMAT_FILE:
MSMg01no532_d12.g1 PHD_FILE: MSMg01no532_d12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:05 2005
         (635 letters)



>mm_chr17_12776989_12778023
          Length = 1035

 Score = 1197 bits (619), Expect = 0.0
 Identities = 631/635 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caccttttccagaaacaaacatttttcctcttagctctgctctccggtgccttcaccccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caccttttccagaaacaaacatttttcctcttagctctgctctccggtgccttcaccccc 260

                                                                       
Query: 61  atctatgtgggcatcgttttcctgggcttcacccccaaccaccactgccggagtcctgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atctatgtgggcatcgttttcctgggcttcacccccaaccaccactgccggagtcctgga 320

                                                                       
Query: 121 gtggccgagctgagccagcggtgtggctggagcccagcagaggagctaaactacaccgtg 180
           |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 gtggccgagctgagccagcgatgtggctggagcccagcagaggagctgaactacaccgtg 380

                                                                       
Query: 181 ccgggcctggagtctgcgggtgaggtctccttcctcagccagtgcatgaggtatgaggtg 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccgggcctggggtctgcgggtgaggtctccttcctcagccagtgcatgaggtatgaggtg 440

                                                                       
Query: 241 gactggaaccagagcacccttgactgtgtggacccactgtccagcctggctgccaacagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gactggaaccagagcacccttgactgtgtggacccactgtccagcctggctgccaacagg 500

                                                                       
Query: 301 agccacttgccactgagcccctgcgagcatggctgggtgtacgacactcccggctcctcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agccacttgccactgagcccctgcgagcatggctgggtgtacgacactcccggctcctcc 560

                                                                       
Query: 361 atcgtcactgaggtaagtgagctctggaattaggatgccaaagaagcaaataaccgagtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atcgtcactgaggtaagtgagctctggaattaggatgccaaagaagcaaataaccgagtc 620

                                                                       
Query: 421 tgtcttaagaaagaacgaggaaatgcttggttcttaacacttgtccagacgtgctttttt 480
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtcttaagaaagaaccaggaaatgcttggttcttaacacttgtccagacgtgctttttt 680

                                                                       
Query: 481 ggacccaatacgccttataaaatcctagcttcctggttaaaaacacgcagcctttcactt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggacccaatacgccttataaaatcctagcttcctggttaaaaacacgcagcctttcactt 740

                                                                       
Query: 541 gcctgaggtagtcagggagaaccctgctggcgctggcgggcatgaggctggtatgtcggg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gcctgaggtagtcagggagaaccctgctggcgctggcgggcatgaggctggtatgtcggg 800

                                              
Query: 601 actcagccatgagcagcaagcaagcacacatattg 635
           |||||||||||||||||||||||||||||||||||
Sbjct: 801 actcagccatgagcagcaagcaagcacacatattg 835


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space:   640625
Effective search space used:   640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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