Query= MSMg01no535_e12.b1 MSMg01no535_e12.b1 CHROMAT_FILE:
MSMg01no535_e12.b1 PHD_FILE: MSMg01no535_e12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:03 2005
(686 letters)
>mm_chr17_62764711_62765796
Length = 1086
Score = 1079 bits (558), Expect = 0.0
Identities = 653/686 (95%), Gaps = 6/686 (0%)
Strand = Plus / Plus
Query: 4 ggaattctgaagagcccttggcagctttaaaatcagtgatgtaccacagagttcagctat 63
||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 204 ggaattctgaagagcccatggcagttttaaaatcagtgatgtaccacagagtccagctat 263
Query: 64 cccatgatgtccagcactcacctgaactggcatatcagaaaaccatatcaaactgagcct 123
|||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 264 cccacgatgtccagcactcacctgaactggcatatccgaaaatcatatcaaactgagcct 323
Query: 124 ttatccttaccctaggcttaggtgaacaaaatgtttgaaagcaaaatctgggaatctaca 183
|||| ||||||| |||||||||||| |||||||||||||||||||| |||||| ||||||
Sbjct: 324 ttattcttaccccaggcttaggtgagcaaaatgtttgaaagcaaaacctgggattctaca 383
Query: 184 ttttc-aaaaaaaaatttctaccctgtcatttctttttcttttcttttcttttttccttc 242
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 384 ttttcaaaaaaaaaatttctaccctgtcatttctttttcttttcttt--ttttttccttc 441
Query: 243 tttttttaaaattagatattttctttatttacatttcaaatttttcccctttcctggttt 302
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ttttttaaaaattagatattttctttatttacatttcaaatttttcccctttcctggttt 501
Query: 303 cccctctgaaaaatcccctatcctctactccctcccctgctcaccaacccacccactcct 362
||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 502 cccttctg-aaaatcccctatcctctaccccctcccctgctcaccaacccacccactcct 560
Query: 363 gttcctggctctggcattcccctataccggggcatagaaccttcacaggaccaagggcct 422
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 561 gttcctggctctggcattcccctatactggggcatagaaccttcacaggaccaagggcct 620
Query: 423 ctcctcccattgatgactgactgggctatcctctgctacatatgcagctagagccataag 482
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||
Sbjct: 621 ctcctcccattgatgactgactaggccatcctctgctacatatgcagctagagccatgag 680
Query: 483 tctctccatgtgttttctttggttggtggtttagtcccagggagctctgggg--tactgg 540
|| | ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 681 tcccaccatgtgttttctttggttggtggtttagtccctgggagctctggggggtactgg 740
Query: 541 ttagttcatattgttgttcctcctatggggctgcaaaccccttcagctccttgggtactc 600
||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 741 ttagttcatgttgttgttcctcctatggggctgcaaaacccttcggctccttgggtactt 800
Query: 601 tctctagctccttcattggggaccctgtgctctggccaataaatggctgtgagcatccac 660
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 801 tctctagctccttcattggggaccctgtgctccagccaataaatggctgtgagcatccac 860
Query: 661 ttctgtacttgtcaggcactggtaga 686
||||||||||||||||||||||||||
Sbjct: 861 ttctgtacttgtcaggcactggtaga 886
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space: 727376
Effective search space used: 727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no535_e12.g1 MSMg01no535_e12.g1 CHROMAT_FILE:
MSMg01no535_e12.g1 PHD_FILE: MSMg01no535_e12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:03 2005
(562 letters)
>mm_chr17_62946408_62947369
Length = 962
Score = 1079 bits (558), Expect = 0.0
Identities = 561/562 (99%)
Strand = Plus / Minus
Query: 1 cttaaattccctttccagggttctgttagtgtggacttggagttggtataacttgcgcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 cttaaattccctttccagggttctgttagtgtggacttggagttggtataacttgcgcac 703
Query: 61 ctttggttcactcttggttaccatgagttagagtgagcagcattctctgtggtttcagcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 ctttggttcactcttggttaccatgagttagagtgagcagcattctctgtggtttcagcc 643
Query: 121 cttccctagtccctgtcagtattcaacaaagcaatttaatctcccgggtaagtgacagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 cttccctagtccctgtcagtattcaacaaagcaatttaatctcccgggtaagtgacagtt 583
Query: 181 ctgccccttgtaactggcatggaatcttttttttttttttaacttgacttgagaggtgaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 ctgccccttgtaactggcatggaatcttttttttttttttaacttgacttgagaggtgaa 523
Query: 241 ctatcaggagagtctcaagaaatcacactagcaagtgcactcattagtaagctgaattgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 ctatcaggagagtctcaagaaatcacactagcaagtgcactcattagtaagctgaattgg 463
Query: 301 tttcagctggattgtttgactgtcctcatctcttagactagcttccccctccctctctct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tttcagctggattgtttgactgtcctcatctcttagactagcttccccctccctctctct 403
Query: 361 tccttttatcatcgatcctgcttacgagacttattacccactctgtggactgagaacatc 420
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 402 tccttttatcatcgatcctgctcacgagacttattacccactctgtggactgagaacatc 343
Query: 421 agcctctgttactgggctattcaaaacagacacacataccatactaccctggcccaattc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 agcctctgttactgggctattcaaaacagacacacataccatactaccctggcccaattc 283
Query: 481 tgacagtaccaggtagagggaggaagaaagtgggttctcccgctgttggccaaacccttc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 tgacagtaccaggtagagggaggaagaaagtgggttctcccgctgttggccaaacccttc 223
Query: 541 taagatgataggaagaaataga 562
||||||||||||||||||||||
Sbjct: 222 taagatgataggaagaaataga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space: 525504
Effective search space used: 525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
