NNNNCCTTTATCAATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXGCGCGGAATTCATCTTGTTTCTCTGTTTCTTATAAAGAGGATCAAAG
ATGGAGAACACGAAACCAGCCTGATGGTTTTTTCTTGATCGTAGAAGGAA
GAAGACATTTTCTTCTTCTATGCCTGGGCATTGCGTTTTCTCTTTAAAGC
TCAGGACTCTTCACACATTAGTTTGTTTGTTATAAAATTTAACATGAGCT
TTTGTTCAAAGGATGAGTTTCTTCATTCTCCTATTTAAAACCTGCAGTTC
AAAGTGACTGCCTCCCTTCCAATCCACTGAGTACTTAACGTTTTGCTGGA
GTTTCAAAGTTAAGTGTCTCCCAAGGGATTGGCCCCCAGGGTGACACTAT
CAGGAGGTTGTGGTGCCTTAGGGCCTGTTTGTCACACCCCTTTGCTTTCT
GATTACAAGGGAACAGTTTACTGTGCCCTATATTTGCCAGTACTACCATC
CAGCACCTTCACGAGATCCTTACGACTACCACCATCCCCCTGTCGGGCAG
AATAACCCCTTTCTCTTTATAAGTTATTTCAGCTATTTTGTTACAGTATC
AGAAAGCCGACTGACACATTTACAAAACACAGTACTTTCTTTCTGAGCAT
AAACTCTTATAGACTCATCACTAATTTGACCAGGAAATCTTTTCTTGCTG
TAGGAGGAGGCTGCATCTTCTTACTATATAAACAGNCCTATGACTGGGCT
TGCTAAGACTT

CCCTTGGAACTATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGCCAGGGAAATAGC
TCGGTGGGTAACATACTTGCCATGAAAATCTGAGGACCTGTGTTTGAATC
CCCTGGACCCAAGGAACGCTGGGTGCAGCCGTGTGCATCTGTAGCCCCAG
TGCCCAGGTGGGAGCGAAGGTCGGGAGAGCACCTGGAGACGTACTGTCCG
GCTAGCTTGGCATCCAGAGTGGCGAACAAAAAGAGGGTCCTTGTCTCAAA
CGTGATGGAAGGCAAGGACATCCAAGATTGTCTTCCAATGTCCACCACCC
ATGTGTGTCCACCTCATGACATGCACCTGCCCACATTCACACCCACAAAA
ATCACACAGTGTGTAAGGATGTGTGTTCTGTTGGGCAGAGTGGCACGACC
TTGTAATCCCATCCCTTGGAGGCTGAGGCAGAAGGGGTAAAAGTCTGAGG
TCATCTGGGGCTATGGATTGAGATTCAGTCCAGCCAGGGATATAGAAGGA
GACCCTGGTTCAAACAAAAGTACTCTTCAGAAACCCCAGATAATCCCCAG
TCTATATACTGTAGCAAGCGAGTTACTAATGCTGATCGTTTATTGAATGC
CCTTTCTCAAATGTTTTTTGCCCAATTCATTANGCACATATGAGGTTCTC
TATGCACCAAGAAGACCTCAGAATAACCATGCAGGGACTGTACTATCACC
TTACTCATCATA

Query= MSMg01no535_j22.b1 MSMg01no535_j22.b1 CHROMAT_FILE:
MSMg01no535_j22.b1 PHD_FILE: MSMg01no535_j22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:29 2005
         (560 letters)



>mm_chr17_49913889_49914847
          Length = 959

 Score = 1027 bits (531), Expect = 0.0
 Identities = 553/561 (98%), Gaps = 3/561 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatcttgtttctctgtttcttataaagaggatcaaagatggagaacacgaaaccagcct 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatcttgcttctctgtttcttataaagaggatcaaagatggagaacacgaaaccagcct 260

                                                                       
Query: 61  gatggttttttcttgatcgtagaaggaagaagacattttcttcttctatgcctgggcatt 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 gatggttttttcttgattgtagaaggaagaagacattttcttcttctatgcctgggcgtt 320

                                                                       
Query: 121 gcgttttctctttaaagctcaggactcttcacacattagtttgtttgttataaaatttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcgttttctctttaaagctcaggactcttcacacattagtttgtttgttataaaatttaa 380

                                                                       
Query: 181 catgagcttttgttcaaaggatgagtttcttcattctcctatttaaaacctgcagttcaa 240
           ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 381 catgagcttttgttcaaaggat--gtttcttcattctcctatttaaaacctgcagttcaa 438

                                                                       
Query: 241 agtgactgcctcccttccaatccactgagtacttaacgttttgctggagtttcaaag-tt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 439 agtgactgcctcccttccaatccactgagtacttaacgttttgctggagtttcaaagttt 498

                                                                       
Query: 300 aagtgtctcccaagggattggcccccagggtgacactatcaggaggttgtggtgccttag 359
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aagtgtctcccaagggattggtccccagggtgacactatcaggaggttgtggtgccttag 558

                                                                       
Query: 360 ggcctgtttgtcacacccctttgctttctgattacaagggaacagtttactgtgccctat 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ggcctgtttgtcacacccctttgctttctgattacaagggaacagtttactgtgccctat 618

                                                                       
Query: 420 atttgccagtactaccatccagcaccttcacgagatccttacgactaccaccatccccct 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 atttgccagtactaccatccagcaccttcacgagatccttacgactaccaccatccccct 678

                                                                       
Query: 480 gtcgggcagaataacccctttctctttataagttatttcagctattttgttacagtatca 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gtcgggcagaataacccctttctctttataagttatttcagctattttgttacagtatca 738

                                
Query: 540 gaaagccgactgacacattta 560
           |||||| ||||||||||||||
Sbjct: 739 gaaagctgactgacacattta 759


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 959
Length adjustment: 10
Effective length of query: 550
Effective length of database: 949
Effective search space:   521950
Effective search space used:   521950
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)