Query= MSMg01no535_p09.b1 MSMg01no535_p09.b1 CHROMAT_FILE:
MSMg01no535_p09.b1 PHD_FILE: MSMg01no535_p09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:55 2005
(700 letters)
>mm_chr17_59891074_59892174
Length = 1101
Score = 1201 bits (621), Expect = 0.0
Identities = 656/679 (96%), Gaps = 21/679 (3%)
Strand = Plus / Minus
Query: 5 gaattcctacttcaaaacaaacatggcataagacaaa--------acacacacacacaca 56
||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 677 gaattcctacttcaaaacaaacatggcataagacaaaacacacacacacacacacacaca 618
Query: 57 cacacacacacacacacacacacacacaactgaatatattggtagatctttaactcaata 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 cacacacacacacacacacacacacacaactgaatatattggtagatctttaactcaata 558
Query: 117 aaattatgtgcagattctggaacctccatgtgtcagtggaactaaggccatgccagaaac 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aaattatgtgcagattctggaacctccatgtgtcagtggaactaaggccatgccagaaac 498
Query: 177 tttcatgtcttaaggtgttaggtttcactcacagttcccaaaagatgcaggggtaacaat 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tttcatgtcttaaggtgttaggtttcactcacagttcccaaaagatgcaggggtaacaat 438
Query: 237 agagtgaaagcggtgggagagcaatgcctggccacaaaagattgttcagtgatttatgca 296
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 437 agagtgaaagcggtgggagagcaatgcctggccacaaaagattgttcagtgagttatgca 378
Query: 297 agaagatggaatgtaaggaaatgagggaaaaaaggaaaatgaactgaagtttttcttttt 356
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 377 agaagatggaatgtaaggaaatgagggaaaaaagaaaaatgaactgaagtttttcttttt 318
Query: 357 aactgaaaatgttaa-attaggcacagagaaca----------tgtgtgtgtgtgtgtgt 405
||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 317 aactgaaaatgttaacattaggcacagagaacatgtgtgtgtgtgtgtgtgtgtgtgtgt 258
Query: 406 gtgtgtgtgtgtgtgtgtattacattctgagaaaatgtttaaaaaaatgtctctcttgta 465
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 257 gtgtgtgtgtgtgtgtgtattacattctgagaaaatgtttaaaaaaatg--tctcttgta 200
Query: 466 ttaatgaactaccagatctgatgtagtataaaaatcaatgctgttgtatcaatctttgtt 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ttaatgaactaccagatctgatgtagtataaaaatcaatgctgttgtatcaatctttgtt 140
Query: 526 caggatggtattaatgataaggtatgaccattcctatgctacccacaacttcatatctgg 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 caggatggtattaatgataaggtatgaccattcctatgctacccacaacttcatatctgg 80
Query: 586 taaaggttgtctcttcttttgctcttaattgccataaaagtatttattttatcctttttc 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79 taaaggttgtctcttcttttgctcttaattgccataaaagtatttattttatcctttttc 20
Query: 646 aaatagtaattattttgca 664
|||||||||||||||||||
Sbjct: 19 aaatagtaattattttgca 1
Score = 83.9 bits (43), Expect = 4e-20
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 42 acacacacacacacacacacacacacacacacacacacacaca 84
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 acacacacacacacacacacacacacacacacacacacacaca 282
Score = 83.9 bits (43), Expect = 4e-20
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 42 acacacacacacacacacacacacacacacacacacacacaca 84
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 acacacacacacacacacacacacacacacacacacacacaca 284
Score = 68.4 bits (35), Expect = 2e-15
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 389 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 423
|||||||||||||||||||||||||||||||||||
Sbjct: 590 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 624
Score = 68.4 bits (35), Expect = 2e-15
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 389 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 423
|||||||||||||||||||||||||||||||||||
Sbjct: 592 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 626
Score = 68.4 bits (35), Expect = 2e-15
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 389 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 423
|||||||||||||||||||||||||||||||||||
Sbjct: 594 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 628
Score = 68.4 bits (35), Expect = 2e-15
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 389 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 423
|||||||||||||||||||||||||||||||||||
Sbjct: 596 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 630
Score = 68.4 bits (35), Expect = 2e-15
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 389 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 423
|||||||||||||||||||||||||||||||||||
Sbjct: 598 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 632
Score = 68.4 bits (35), Expect = 2e-15
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 389 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 423
|||||||||||||||||||||||||||||||||||
Sbjct: 600 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 634
Score = 68.4 bits (35), Expect = 2e-15
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 389 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 423
|||||||||||||||||||||||||||||||||||
Sbjct: 602 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 636
Score = 68.4 bits (35), Expect = 2e-15
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 389 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 423
|||||||||||||||||||||||||||||||||||
Sbjct: 604 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 638
Score = 68.4 bits (35), Expect = 2e-15
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 389 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 423
|||||||||||||||||||||||||||||||||||
Sbjct: 606 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 640
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 155
Number of extensions: 63
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 18
Length of query: 700
Length of database: 1101
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1091
Effective search space: 752790
Effective search space used: 752790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no535_p09.g1 MSMg01no535_p09.g1 CHROMAT_FILE:
MSMg01no535_p09.g1 PHD_FILE: MSMg01no535_p09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:56 2005
(680 letters)
>mm_chr17_59824210_59825289
Length = 1080
Score = 1087 bits (562), Expect = 0.0
Identities = 635/680 (93%), Gaps = 32/680 (4%)
Strand = Plus / Plus
Query: 1 aattaatacatcttcatcttagttctttggactgttatcccttttaaatttgtatgttca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattaatacatcttcatcttagttctttggactgttatcccttttaaatttgtatgttca 260
Query: 61 tggcagatttgtattgatttcattttatgaactagatacagctactagttttcactcaac 120
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggcagatttgtattgattgcattttatgaactagatacagctactagttttcactcaaa 320
Query: 121 agcatagaaacagaaaaagtaatcaccattgtgtctatatagaaaatctatgaatctcta 180
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 agcatagaaaaagaaaaagtaatcaccactgtgtctatatagaaaatctatgaatctcta 380
Query: 181 ggtgttttatatggatatcctttattcaatcctcttgctttcttgtagcaaaactagtaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtgttttatatggatatcctttattcaatcctcttgctttcttgtagcaaaactagtaa 440
Query: 241 aggagtgtgtatcttctctatctaacaactccagcctttgtggccaaacatcgcatggaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggagtgtgtatcttctctatctaacaactccagcctttgtggccaaacatcgcatggaa 500
Query: 301 gtgccctgaagcattttctcctcatccaacagagttgcctaactgccaatatctctctac 360
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 501 gttccctgaagcattttctcctcatccagcagagttgcctaactgccaatatctctctac 560
Query: 361 ttcgcaagtttgcacagctatgtagtaagatgggcccaatctgcctaatatgttgggaag 420
|| || | ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 561 tttacaggcttgcacagctatgtagtaagatgggcccaatctgcctcatatgttgggaag 620
Query: 421 ggcatatgtcagatactttagatagacttttgaaagggtaaaatggtgaatgggtctgca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggcatatgtcagatactttagatagacttttgaaagggtaaaatggtgaatgggtctgca 680
Query: 481 ctcttagataactcaggatattcagttgttgctaactccctctgttatgttttgtttttg 540
|||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 681 ctcttagataacccaggatattcagttgttgctaactccctctgtt-------------- 726
Query: 541 aaagttgacacaggagtttttctgctattcaaggttccttcatatgcaaatggttaggta 600
|||||||||||||||||||||||||||||||||||| |||||
Sbjct: 727 ------------------tttctgctattcaaggttccttcatatgcaaatggtcaggta 768
Query: 601 tttatttcactctagttttctccccttgaaagattcataggacaagtgtggctttagaga 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 tttatttcactctagttttctccccttgaaagattcataggacaagtgtggctttagaga 828
Query: 661 cagagctgtatagtcttagg 680
||||||||||||||||||||
Sbjct: 829 cagagctgtatagtcttagg 848
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space: 716900
Effective search space used: 716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
